Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00891 TTGTATGTTAGGACCGAGCTTTGCCGTTTCAGTGGTGCAAAGATCTACCCTGGGAAAGGCATAAGATTTGTGCGTGGTGATTCTCAGGTCTTCCTCTTTGCGAACTCCAAATGCAAGAGGTATTTTCACAACCGATTGAAGCCTTCAAAGCTCACCTGGACTGCCATGTACAGGAAACAGCATAAGAAGGATATTGCCCAAGAAGCTGTGAAAAAGAGGCGTAGGGCCACAAAGAAACCTTACTCAAGGTCCATTGTTGGTGCTACACTGGAAGTTATTCAGAAAAAAAGAACAGAGAAACCAGAAGTTCGTGATGCTGCTAGAGAAGCTGCTCTGCGTGAAATCAAAGAAAGGGTAAAGAAAACAAAGGATGAGAAGAAGGCAAAGAAGGCTGAAGTTCAGGCTAAGTTACAAAAATCCCAAGGCAAAGGTGCTGTCAGCAAGGGTGCTGCACCCAAAGGACCCAAGCTTGGTGGTGGGGGTGGCAAGCGCTGA 495 0.4646 MYVRTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00891 164 Gene3D - 69 138 - -
Vimu3g00891 164 MobiDBLite consensus disorder prediction 118 164 - -
Vimu3g00891 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Vimu3g00891 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Vimu3g00891 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Vimu3g00891 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Vimu3g00891 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Vimu3g00891 164 SMART 4TRASH 8 46 IPR011017 -
Vimu3g00891 164 FunFam 60S ribosomal protein L24 3 64 - -
Vimu3g00891 164 Coils Coil 112 143 - -
Vimu3g00891 164 MobiDBLite consensus disorder prediction 118 136 - -
Vimu3g00891 164 PANTHER 60S RIBOSOMAL PROTEIN L24 4 155 IPR000988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00891 Vimu-Chr3 10762661 10763586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00891 1 157 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 82.803 7.13e-85 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00891 K02896 - gmx:100499884 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00891 3 10762661 10763586 Vimu3g00891 3 10762661 10763586 ECH
Vimu6g02415 6 21110930 21112130 Vimu3g00891 3 10762661 10763586 PCT