Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00890 ATGGAGTGGAATGGGAGCACAAGACGTTATGTTCCTCGACCAGACTCTTCCTTCGGCTTCCTTTACAACTACAACTACACACCATACCCAGGAATTGAAGTGAAGCAACAAAGTATAGCAGAGTCATCCATGGAAAAAATGAACTGCGGGAACCAGGACAAGAAGAAGAGATTAACGACTGACCAGTTGGACTCCTTGGAGAGTAGTTTTCAGAAGGAGATAAAGCTAGACCCTGATAGGAAGATGAAGCTTTCCAAAGAGTTAGGGCTTCAACCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTGCAAGGTGGAAGAACAAGCAACTCGAACACTTGTACGATTCACTTAAACAGGAATTTGATGTCATATCCAAGGAGAAACAGAAGCTAGAGGAAGAGGTAATAAAGTTGAAGGGTATGCTGAGAGAGCAAGCTTCTAGAACACAAGTGTCAACAGGTTACACAGAAATCTCTGGGGAAGAAACAGTAGAAAGCACGTCAGAGGCTTTGCGTTGCTCCAAACGGAGAACACTGCAGCAGCAGCAGCATCATCATCATCAGAATATTGGAGAAGGAAACTGTTCTTTCACTTTGGAAGATTACAACACAGTTCCAGTACTACCCTACTGGCCTGGGGTCCCTTACTATCCCTAA 660 0.4439 MEWNGSTRRYVPRPDSSFGFLYNYNYTPYPGIEVKQQSIAESSMEKMNCGNQDKKKRLTTDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLEEEVIKLKGMLREQASRTQVSTGYTEISGEETVESTSEALRCSKRRTLQQQQHHHHQNIGEGNCSFTLEDYNTVPVLPYWPGVPYYP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00890 219 CDD homeodomain 54 110 IPR001356 GO:0003677
Vimu3g00890 219 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677
Vimu3g00890 219 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677
Vimu3g00890 219 Gene3D - 46 114 - -
Vimu3g00890 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 44 183 IPR045224 GO:0003700
Vimu3g00890 219 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Vimu3g00890 219 SMART HOX_1 52 113 IPR001356 GO:0003677
Vimu3g00890 219 FunFam Putative homeobox-leucine zipper protein ATHB-51 51 114 - -
Vimu3g00890 219 Pfam Homeobox associated leucine zipper 109 143 IPR003106 GO:0006355|GO:0043565
Vimu3g00890 219 SUPERFAMILY Homeodomain-like 44 111 IPR009057 -
Vimu3g00890 219 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Vimu3g00890 219 Pfam Homeodomain 54 108 IPR001356 GO:0003677
Vimu3g00890 219 Coils Coil 101 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00890 Vimu-Chr3 10731921 10733990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00890 50 148 Homeobox Transcription Factor Family AT2G36610 67.290 6.39e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu3g00890 Homeodomain 5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00890 - - gmx:100778007 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00890 3 10731921 10733990 Vimu3g00890 3 10731921 10733990 ECH
Vimu6g02414 6 21106695 21108239 Vimu3g00890 3 10731921 10733990 PCT