Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00887 ATGGAACCCAATGGGCTAGGCGCGGGAATGTTCTCTGGGTTGGTGGGAGTGGAGAACTCTTTGCCTCCGCAGCAACAGCAAAACCCTCACCATTTGCAAAACCACTCCCAGATGGTTCCCTATGGCCCACACCATGACACTGATCCACATCATCAGCATCATAATCAATCGATCAAACAAGGGTACCCTCAATATTCTTCGGTGAAGACCAAACAACAGCAACAAAGTGCCCTCAGTGACGATGATGATGACACCTCGGACCCCAAGAAGAAGGTGTCGATGTGGCAGAGAATGAAGTGGACTGACACCATGGTGAGGCTTTTGATAATGGCGGTTTATTACATTGGTGATGAGGGTGGCTCGGAAGGGAGTGATAAGAAGAAGTCCTCGGGTATGCTGCAGAAGAAAGGGAAGTGGAAGTCGGTGTCGAGGGCTATGATGGAGAAAGGGTTCTATGTTTCTCCTCAACAGTGTGAGGATAAGTTCAATGACTTGAACAAGAGGTATAAGAGGGTGAATGATATTCTCGGGAAGGGAACTGCTTGCAGGGTTGTGGAGAATCAGAGTTTGTTGGAGACGATGGAGTTGTCACCAAAGATGAAAGAGGAGGTTAAGAAGTTGCTCAATTCCAAACATCTGTTCTTCAGGGAAATGTGTGCTTACCATAATAGTTGTGGTCATGTGAATAACAATGCTCCACAGCAAGGAGAGAACGGGGGTGAGGTGTCTCAGTCTCAGTCTCAGGCTCAACTACAGCCTCAGCAGCAGCAACAGCCTCAGCAGCAGCAGCAACAGCAACGTTGTTTTCATTCATCAGAGGTGGGGAATTTGGGGGGTTTGAGGATGTTGAAAATGGGAAATGGGGAAGAGAATGATGATGATTCGGATGAGGATGATGAGTCTGAGGATGATTCGGATGAGGAGGAAGATGATTCAGGAGAAGGTGGTTCAAGGGGTCATGTGGGGCATGGACATGAAGATATGGAGGATGATAATGATGGAAGGTCAATGAGGAAGAAGGCAAGGAAAGTGAGGGGAGTTGGTGTGTCAGCAGTTATGATGCAGCAACTGAATGCTGAGGTGAATGGTGTGTTCCAAGATGGGGGTAGGAGTGTTTGGGAGAAGAAGCAATGGATGAGAAACAGGATACTGCAGTTGGAGGAGCAGCAATTGAGCTATCAGAGTCAATCATATGAGTTGGAGAAACAAAGGTTGAAATGGGCAAGGTTTAGCAGCAAGAAGGAGAGGGAAATGGAGAGAGCCAAACTTGAAAATGAACGAAAGAGGCTTGAGAATGAGAGAATGGTTTTGCTCATTCGACAGAAGGAGCTTGAGCTTATGAGTCTTCAACACCAACAGCAGCAACAACAACATTCTTCTACTTAG 1386 0.4697 MEPNGLGAGMFSGLVGVENSLPPQQQQNPHHLQNHSQMVPYGPHHDTDPHHQHHNQSIKQGYPQYSSVKTKQQQQSALSDDDDDTSDPKKKVSMWQRMKWTDTMVRLLIMAVYYIGDEGGSEGSDKKKSSGMLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLLETMELSPKMKEEVKKLLNSKHLFFREMCAYHNSCGHVNNNAPQQGENGGEVSQSQSQAQLQPQQQQQPQQQQQQQRCFHSSEVGNLGGLRMLKMGNGEENDDDSDEDDESEDDSDEEEDDSGEGGSRGHVGHGHEDMEDDNDGRSMRKKARKVRGVGVSAVMMQQLNAEVNGVFQDGGRSVWEKKQWMRNRILQLEEQQLSYQSQSYELEKQRLKWARFSSKKEREMERAKLENERKRLENERMVLLIRQKELELMSLQHQQQQQQHSST 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00887 461 MobiDBLite consensus disorder prediction 230 272 - -
Vimu3g00887 461 MobiDBLite consensus disorder prediction 18 35 - -
Vimu3g00887 461 MobiDBLite consensus disorder prediction 313 338 - -
Vimu3g00887 461 MobiDBLite consensus disorder prediction 230 342 - -
Vimu3g00887 461 MobiDBLite consensus disorder prediction 76 92 - -
Vimu3g00887 461 MobiDBLite consensus disorder prediction 1 92 - -
Vimu3g00887 461 Coils Coil 411 440 - -
Vimu3g00887 461 Gene3D - 100 171 - -
Vimu3g00887 461 MobiDBLite consensus disorder prediction 56 75 - -
Vimu3g00887 461 PANTHER F16F4.11 PROTEIN-RELATED 12 450 - -
Vimu3g00887 461 MobiDBLite consensus disorder prediction 290 312 - -
Vimu3g00887 461 Pfam Myb/SANT-like DNA-binding domain 97 220 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00887 Vimu-Chr3 10678426 10680493 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu3g00887 Myb_DNA-bind_4 4e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00887 - - gmx:100816661 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00887 3 10678426 10680493 Vimu3g00887 3 10678426 10680493 ECH
Vimu6g02411 6 21086358 21087393 Vimu3g00887 3 10678426 10680493 PCT