Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00885 ATACCAGACCCACTCACGGAAGGCACGCTCCGTCAAACCCTCCCACACACACCTTCTCTCAACTCTCCATTCTCTTTCCCTAACGTCCCCGACGACGCCGTAACGTCCTCCCTCACCGTTATGGCCTCTTGCGACGACGACGACGACTTCTCTCTCCTCCGTGACGATAACCACCACCTCCACCAGCCTTATGCCCCGCACCACCACTTCTCTCCCTCCGCCGTCGCCGTCGCTCCTGTCCCACCCAAATCCGTTGCTGACGACGCCGACAACTATGGAAACCCCTTCGACGACGACGGTGGCAGCGAAAAGCGGAAGGACCGGGAGGAGATCAGCGAGGGAGCCACGTCTTACGGATTCAACAAGAGATCTAAGGCTCCGCAGTCGAGTGCAGGCAGCGCGGAGTACAGAAAGGATAGGGAGGAGTGGAGCGACACGGCCATCGTGTGCCTCCTCGAGGCTTACACAGAGAAGTTCACACAGCTGAATCGAGGAAACCTGAGAGGAAGGGATTGGGAGGAGGTTGCGTTTGTGGTGAGCGAACGGTGCGAGAACCAATCGAAGAGCGTGGAACAGTGTAAGAACAAGGTAGATAACCTAAAAAAGAGGTACAAATTGGAGCGACAAAGAATGAGCAGTGGCTGCATTTCTACCAGTCACTGGCCTTGGTTCAAACAATTGGAGCAGATCGTCGGGAATTCTCTTCCGGCAAAATTCTCTGATGAGGATAAAGCGGTTGTTTCTGCCGGAACTTCGCCCAGACAATCGAAAAGATATGGAGTGGCAACACCCAGCACAGGTCAAGCGAATAACATTAGGTCAAAAGCACTGACAAACCTTAGATGGCGGAGGGTTGTCTTCAAAATTAGTGGAGCAGCTCTTACTGGATCTGATACCTGCAACATGGACCCTAAGGTGGCTATGTTAGTTTCAAGAGAAGTTGCCATAGCTTCCCGCCTTGGTGTTGAGGTGGCGATTGTTGTTGGAGGCTGTAATTTCTTCTCTGGAGATGCATGGGTAAATGCGACAGGTCTAGAAAGATGTACTGCATACCAAGTTGGAGCACATCCCTTACCCAGGTCACAAGGCTACAAAGTGCTTATCACTTTGTTGCTTAGGTACATATGCTGCCACGTGACATTTTTAATCTTTCTGTGTGGTTTTCTTGAACTTCAATTTGCCAGCATGATGGCAACAGTGATGAATTCAATATTGCTCCAATCGACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAATTGCCATGCAGGAGTTTGCTGAACTATACAATAGGCAGCGGGCTATCAGACATCTTGAGAAAGGAAGAGTTATTATATTTGGTGGCATCAGTTTTGGTGCTGGCAATCCACTTTTCTCAACTGACATAGCTGCAGCTCTTCGTGCTTCAGAGCCATCAGCATATATCTCCTTCAACCTTGCAGTTAATGCTGAAGCAGTCCTCAAGGGCACTAATGTAGACGGTGTGTATGACTGCAACTCACGAGATAACAATTTCACTTTTGAGCACATATCCTTCAGAGAGCTGGGCTCAAGAGGAATCACTTCTATGGATGCGTCAGCGCTGACTTTATGCAAGGAAAATGCCATTCCTGTCGTGGTTTTTAATTTACTGGAGCCTGGGAACATCTCTAAAGCTTTATGTGGAGAACAAGTTGGCACACTAATTGATCAAACTGGAGCAGTAAGCTAA 1719 0.4904 IPDPLTEGTLRQTLPHTPSLNSPFSFPNVPDDAVTSSLTVMASCDDDDDFSLLRDDNHHLHQPYAPHHHFSPSAVAVAPVPPKSVADDADNYGNPFDDDGGSEKRKDREEISEGATSYGFNKRSKAPQSSAGSAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAFVVSERCENQSKSVEQCKNKVDNLKKRYKLERQRMSSGCISTSHWPWFKQLEQIVGNSLPAKFSDEDKAVVSAGTSPRQSKRYGVATPSTGQANNIRSKALTNLRWRRVVFKISGAALTGSDTCNMDPKVAMLVSREVAIASRLGVEVAIVVGGCNFFSGDAWVNATGLERCTAYQVGAHPLPRSQGYKVLITLLLRYICCHVTFLIFLCGFLELQFASMMATVMNSILLQSTLEKMGVQTRVQTSIAMQEFAELYNRQRAIRHLEKGRVIIFGGISFGAGNPLFSTDIAAALRASEPSAYISFNLAVNAEAVLKGTNVDGVYDCNSRDNNFTFEHISFRELGSRGITSMDASALTLCKENAIPVVVFNLLEPGNISKALCGEQVGTLIDQTGAVS 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00885 572 MobiDBLite consensus disorder prediction 97 113 - -
Vimu3g00885 572 FunFam Aspartate/glutamate/uridylate kinase family protein 143 206 - -
Vimu3g00885 572 MobiDBLite consensus disorder prediction 117 131 - -
Vimu3g00885 572 Pfam Amino acid kinase family 284 545 IPR001048 -
Vimu3g00885 572 Pfam Myb/SANT-like DNA-binding domain 140 230 IPR044822 -
Vimu3g00885 572 Gene3D - 273 571 IPR036393 -
Vimu3g00885 572 SUPERFAMILY Carbamate kinase-like 281 565 IPR036393 -
Vimu3g00885 572 Coils Coil 183 210 - -
Vimu3g00885 572 MobiDBLite consensus disorder prediction 10 28 - -
Vimu3g00885 572 CDD AAK_UMPK-PyrH-Ec 283 566 IPR015963 GO:0005737|GO:0006221|GO:0033862
Vimu3g00885 572 MobiDBLite consensus disorder prediction 80 138 - -
Vimu3g00885 572 MobiDBLite consensus disorder prediction 1 28 - -
Vimu3g00885 572 Gene3D - 143 206 - -
Vimu3g00885 572 PANTHER URIDYLATE KINASE 136 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00885 Vimu-Chr3 10635843 10639984 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00885 117 234 Trihelix Transcription Factor Family AT3G14180 36.364 2.79e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu3g00885 AA_kinase 2.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00885 - - gmx:100805459 791.956