Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00884 ATGCTGAAGAAATTCGGTATCACGGCCTTCTCAGGTAACGAGGGTTTATGTGGTGTAACACCGTTACCTGTGTGTTCCTTCACCACAAACCCTCCTAATGATAATGAGAATAACAATGAAAATGAACCGTCCCAGACAGTTCCTTCAAACCCTAGTTCCTTCCCAGAAACCAGCATAATAGCTCGACCGGGGAAGGAGCGTCATAAGGGTTTAAGTCCCGGTGCCATTGTGGCAATTGTTGTGGGGAATTGTGTGGCGTTGCTTGTGATGACTTCATTTCTCGTGGCGCATTGTTGCGCGAGGGGAAGAGGGTCTAGTTTGGTGGGGAGTGGGGAGAGTTATGGGAAGAGGAAGAGTGGGAGCAGTTACAATGGGAGTGAGAAGAAGGTGTATGGGAGTGGGGGTGGTGAGAGTGATGGGACTACGGGGACTGATAGGAGTAGGCTTGTGTTTTTTGATCGGAGGAGTGAGTTTGAGTTGGAGGATTTGCTGCGAGCCTCGGCAGAGATGCTTGGGAAGGGTAGTTTAGGGACGGTTTATAGGGCGGTGCTTGATGATGGGTGCACCGTGGCGGTGAAGAGGCTGAAGGATGCCAACCCTTGCGCGAGGCATGAGTTTGAGCAGTATATGGATGTGATTGGGAAGCTTAAGCACCCTAATGTTGTGAGACTCAAAGCCTATTACTATGCCAAAGAGGAAAAGCTTCTTGTCTATGACTATCTCTCCAATGGAAGCTTGCATGCTCTTCTTCATGGGAACCGTGGTCCGGGGAGGATTCCATTGGATTGGACTACTAGAATAAGCCTGGTGTTGGGAGCAGCAAGAGGTCTTGCGAAGATCCACGCAGAGTACAGTGCAGCCAAAGTGCCTCACGGGAACGTGAAATCTTCGAACGTGCTTCTGGACAAGAACGGCGTCGCTTGCATCTCGGACTTCGGGCTATCACTCCTCTTGAACCCGGTTCACGCCATTGCACGACTGGGAGGGTACAGGGCACCCGAACAGGAACAGCACAAGAGGTTGTCTCAGCAAGCTGACGTGTACAGCTTCGGGGTGTTGCTGTTGGAAGTTCTCACAGGAAGAGCTCCTTCCTCGCAGTACCCTTCACCGGGTCGTCCCAGAATGGAGGAAGAGGAACAGGCCGTGGTGGACCTTCCCAAATGGGTTCGCTCCGTCGTGAAGGAAGAGTGGACCGCAGAGGTGTTTGACCAGGAGCTTTTGCGCTACAAGAACATCGAGGAAGAGCTTGTGTCCATGCTGCATGTGGGGTTTGCCTGTGTTGTGGCGCAGCCGGAGAAGAGGCCAACTATGGAAGAAGTTGTGAAAATGGTTGAGGAGATCAGGGTGGAGCAATCGCCACTTGGGGAGGACTATGATGAATCGCGCAATTCGCTTTCACCTTCCATTCCCACCACTGAAGATGGTCTACCTTAG 1434 0.5195 MLKKFGITAFSGNEGLCGVTPLPVCSFTTNPPNDNENNNENEPSQTVPSNPSSFPETSIIARPGKERHKGLSPGAIVAIVVGNCVALLVMTSFLVAHCCARGRGSSLVGSGESYGKRKSGSSYNGSEKKVYGSGGGESDGTTGTDRSRLVFFDRRSEFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCARHEFEQYMDVIGKLKHPNVVRLKAYYYAKEEKLLVYDYLSNGSLHALLHGNRGPGRIPLDWTTRISLVLGAARGLAKIHAEYSAAKVPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQEQHKRLSQQADVYSFGVLLLEVLTGRAPSSQYPSPGRPRMEEEEQAVVDLPKWVRSVVKEEWTAEVFDQELLRYKNIEEELVSMLHVGFACVVAQPEKRPTMEEVVKMVEEIRVEQSPLGEDYDESRNSLSPSIPTTEDGLP 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00884 477 Pfam Protein kinase domain 169 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00884 477 SUPERFAMILY Protein kinase-like (PK-like) 169 445 IPR011009 -
Vimu3g00884 477 MobiDBLite consensus disorder prediction 106 142 - -
Vimu3g00884 477 ProSiteProfiles Protein kinase domain profile. 165 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00884 477 FunFam pollen receptor-like kinase 1 136 240 - -
Vimu3g00884 477 MobiDBLite consensus disorder prediction 451 477 - -
Vimu3g00884 477 Gene3D Phosphorylase Kinase; domain 1 141 240 - -
Vimu3g00884 477 MobiDBLite consensus disorder prediction 28 58 - -
Vimu3g00884 477 MobiDBLite consensus disorder prediction 28 57 - -
Vimu3g00884 477 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 2 449 IPR046959 -
Vimu3g00884 477 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 241 456 - -
Vimu3g00884 477 Gene3D Transferase(Phosphotransferase) domain 1 241 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00884 Vimu-Chr3 10633040 10634710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00884 1 473 Receptor kinase-like Gene Family AT2G36570 70.492 0.0 661
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu3g00884 Pkinase 3.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00884 - - gmx:100804135 843.958