Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00879 TTCCTTCTCACTGCTCTTTCTTTGCACTCTATCTCGTCTAAACCCTTCAATTGCAACTTTCTCTTACTCAATCCACATCCAGTCATGTATGGCGGTGACGAAGTATCAGCCATAGTAATAGACCTGGGTTCGCATACATGCAAAGCCGGTTACGCTGGCGAAGATGCTCCCAAGGCCGTTTTCCCCTCTGTTGTTGGTGCAATTGATCAAATGGACATTGATGGACCTGTTCATGCTGGAGTGTCATCTGGATCTGCTGTGGGTATACAGAACAATAAAAAAAATCATGAATCTGACAGAACCAAGGAAAAATGTAAACTTTATATAGGATCTCAGTCCTTGGGATACCGTCGAGACTATATGGAGCTGCTCTCACCATTGAAGAATGGAGTTATTGTTGACTGGAATATTGTTGACAACATATGGGATCATGCTTTGAGGGAATGCCTCTTAGTTGATCCTAAAGAGCGTCCAATGCTACTTGCCGAACAATGTTCCAACACTCAAGAACAGAGAGAAAGGGCAGCAGAACTTATGTTTGAAAAATATAAAGTACCAGCATTGTTTTTGGCGAAGAATGCGGTTCTCACATCTTTTGCATCAGGGCGTGCTACCTCGTTAGTTGTTGATAGATTGGGTACTGTGAATTCTGTTAGGAAGATAGTGCAATACCTGGTCTTCCTTTTTATTTTTCATGGTGCTGGATCAACTACAGTTGCACCAGTACTGGATGGTTATGTTCTTCAAAAGGCCCTCGTAACATTGTCATATCTGAGGAGGACAATTTCTGACAGAATGCTTGACGAGAAGTTTGGAAGCCAAAGCCAAGACCTCGATATTCATTCAAGAAAAAAGGAAATAAGTCCTGGGAATCTTCAGGTGTTGTATTCCATTGTTGCCCCCAGAGGGCTTCAACTTTGTGGTAGAACTATCATGAAATGGAATAAGGACTCCATTTTCATCTTTTCAAGCCTGATGCCCACTCCTGATCTTGAACTTTATCTACCAATTAATTGTTCAAGTTTGATAAGAATGACACTCTTGGTTGTGATTGTAGACCTTGATTTTCCACATACAACAGAAGGCTACAAACTCTACTGCCAGAGGGTTATTGTCGAAGACATCAAGGAATGTGTTTGCCGAACACCAGATTCTCCATATGATGAGAGTGCGTATTCTAATATTCCTATGACTCCATACGAGCTTCCTGATGGCCAGATTATTGAAGTCGGATCTGACAGATTCAAGATTCCTGATATTCTTTTTAATCCATCTCTTGTTCAGGTGTTTCAGTCAAATTTCCATTCCGCGCGTCCTCTTATTAATTCACTTCTTCAATATATATTGCAGACAATCCCTGGCATGGAGATTATTGCAGAAATTGCTTCTTCACTTCGCAGTCTTCCAAAAATAATCATAGAGAGCATTAATAAGTGTGATGTGGACATTCGTAGAGAACTATTTAGTACCATACTGGTAACCTTCATATTGATTTGGTCTCTCCTGTTCCACCGCTTTCTGAGTTTAAGGGAGTCCCCTCAAGCTGCTAGAGTTAAAGTATTTGCCAGTGGCAATGCTACTGAAAGAAGGTTCAGTGTTTGGATAGGGGGGAGTATATTGGCTTCTCTTGGCTCCTTCCAGCAGATGTGGTTCTCCAAGTCTGATGTGCTATGGATAGGTATGAAGAGCAAGGGGCTTCTTATATCCAAAGAAAATGCCCGAGTTTCCAACGGTGTAACTGGCATAACCTCATTTTCTTTTTTCTGCGTCGCGCAGGATCTCCCTTTCCATATTGTGTAA 1800 0.4161 FLLTALSLHSISSKPFNCNFLLLNPHPVMYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDGPVHAGVSSGSAVGIQNNKKNHESDRTKEKCKLYIGSQSLGYRRDYMELLSPLKNGVIVDWNIVDNIWDHALRECLLVDPKERPMLLAEQCSNTQEQRERAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDRLGTVNSVRKIVQYLVFLFIFHGAGSTTVAPVLDGYVLQKALVTLSYLRRTISDRMLDEKFGSQSQDLDIHSRKKEISPGNLQVLYSIVAPRGLQLCGRTIMKWNKDSIFIFSSLMPTPDLELYLPINCSSLIRMTLLVVIVDLDFPHTTEGYKLYCQRVIVEDIKECVCRTPDSPYDESAYSNIPMTPYELPDGQIIEVGSDRFKIPDILFNPSLVQVFQSNFHSARPLINSLLQYILQTIPGMEIIAEIASSLRSLPKIIIESINKCDVDIRRELFSTILVTFILIWSLLFHRFLSLRESPQAARVKVFASGNATERRFSVWIGGSILASLGSFQQMWFSKSDVLWIGMKSKGLLISKENARVSNGVTGITSFSFFCVAQDLPFHIV 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00879 599 Gene3D - 468 535 - -
Vimu3g00879 599 Gene3D - 31 287 - -
Vimu3g00879 599 Gene3D Actin; Chain A, domain 4 355 429 - -
Vimu3g00879 599 FunFam Actin-related protein 4 354 428 - -
Vimu3g00879 599 CDD NBD_sugar-kinase_HSP70_actin 125 247 - -
Vimu3g00879 599 Gene3D - 536 555 - -
Vimu3g00879 599 FunFam Actin-related protein 4 29 211 - -
Vimu3g00879 599 Pfam Actin 32 555 IPR004000 -
Vimu3g00879 599 PANTHER ACTIN 37 556 IPR004000 -
Vimu3g00879 599 SMART actin_3 35 574 IPR004000 -
Vimu3g00879 599 SUPERFAMILY Actin-like ATPase domain 33 209 IPR043129 -
Vimu3g00879 599 SUPERFAMILY Actin-like ATPase domain 232 555 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00879 Vimu-Chr3 10514491 10521514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00879 359 555 Cytoskeleton Gene Families AT5G09810 33.333 2.04e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00879 K11340 - gmx:100785066 546.199