Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00865 ATGATGGTGAACATGATGTCCGGTAAAGATGAACTTTGTGGTACCAAGATGGCTGGTGATAAAGACGAAGGAGAACCTGAACAGTGTGCGGCGTTGGTCTCTTGGTGGCTGCCATGGTGTGAGCTGAGGGACTACCGGAAAAAGCTTGGAAAGAGAGATGGACATGAGTGGGGTCATCTACGAGTAAGCGGCAGTGGTGTATTCTGTAAAAACGGCCTGGAAAATATTGGAAATTGGGGTGGAGTGGAAGACGTGGTGCCTATGGACATATTGAAGAGTGTCAAAAGCCGTTTGATGAGATTCGAAAGCTTGTTGAAGGGTGATGTAGCGAGCATCGTGGTCTTGAGTAGTGAGAAGTTGTGTTTGAAGTATATTTTGAGCCTCACAAAGGCGTTGACTTATTGCCACGAGAAGCATGTTATTCATAGGGATATCAAGCCTGAAAATTTGTTGCTGGATCACGAGTGTCGTCTTAAAATTGGAGACTTTGGTTGGTCTGTTCAGTCTAAAAGCAAAAGACATACCATGTGTGGCACATTGGATTATTTAGCACCAGAAATGGTTGAAAATAAAGCTCATGACTATGCTGTTGATAACTGGACTCTTGGTATCCTTTGTTATGAGTTCCTCTTTGGTGCCCCTCCATTTGAGGCTGAGAGTCAAGCTGATACCTTCAAAAGGATAATGAAGGTTGACCTAAGCTTCCCTTCCAACCCTTCTGTTTCTTTAGATGCCAAAAGTCTGATTAGCCGGCTTCTGGTGAAGGACTCCTCACGAAGGCTCTCTCTTCAGAAGATAATGGAACATCCTTGGATAGTCAAGAATGCAGATTTTTCGGGTATTTGCTTGTAA 852 0.4401 MMVNMMSGKDELCGTKMAGDKDEGEPEQCAALVSWWLPWCELRDYRKKLGKRDGHEWGHLRVSGSGVFCKNGLENIGNWGGVEDVVPMDILKSVKSRLMRFESLLKGDVASIVVLSSEKLCLKYILSLTKALTYCHEKHVIHRDIKPENLLLDHECRLKIGDFGWSVQSKSKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGILCYEFLFGAPPFEAESQADTFKRIMKVDLSFPSNPSVSLDAKSLISRLLVKDSSRRLSLQKIMEHPWIVKNADFSGICL 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00865 283 SUPERFAMILY Protein kinase-like (PK-like) 96 275 IPR011009 -
Vimu3g00865 283 SMART serkin_6 57 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00865 283 Gene3D Transferase(Phosphotransferase) domain 1 88 280 - -
Vimu3g00865 283 Pfam Protein kinase domain 89 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00865 283 ProSiteProfiles Protein kinase domain profile. 1 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00865 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vimu3g00865 283 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 117 277 IPR030616 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00865 Vimu-Chr3 10250907 10255708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00865 118 275 CBL-interacting serine-threonine protein kinases AT5G10930 42.683 3.39e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Vimu3g00865 Pkinase 8.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00865 K08850 - gmx:100800111 312.383