Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00861 ATGACAAGGGAAGGGAATGCTACTCTAAACTTTATCCCAGAATTTGCATGTTACAATACAACGTTTGATCTTAGCAACATAATCTGGAGGAGTGACAATGTCATTTCAGAACGTGTTCCTCTTCTGTCTATTCAAATTGCCTACAATATCCTTGCATCTAGTTTTTTTCACCACATCCTCAAGCAATTCCACCTACCTCTTACGGTTGCCCAGATGCTTGGTGGTGTGCTTTTGAGTTCATCATTTTTGGGAAGAATCCCTGGAGTTTTTCACATGATTTACCGTCCGGAAGGAATCATGAGTGTTGAAACCTTTGCGAATATTGGAATCATGTACTATGTGTTCCTTACTGGGTTGGAAATGAACTGCGACACCATTTTGAGATCAAGCAAGCAGGCTGTAGTCATTGCTGTTGCGAGCATTCTTATTCCAGCATTGGTTGGAGCTGGTTTTTTTGCTCTACATAATGACTTAGCAGGCGGATCAAGCGTTGCGCTCACTGCTAAAGGGTATATGTTTTGGTGTGCAATTCTTTCTGTCACCAGTTTTCCAGTCCTTGCAAGGCTCCTATCAGATCTCAAGATCCTCTACACAAGGCTTGGAAAAGATGCCTTAACAGCAGCCATTCTAATTGATGCATTTGGCTGGGTTTTGTTCTCGCTCTTCATTCCCTTTTCCCACGCGGGTGGAAAACCACTCCTCTCACTAATATGCACATTGCTGTTCATTGCGTTCTGCTTCTGCGTGGTGCGTCCAATCCTGGCTCGAGTGGTTGAACACAGAATGAGGTCTGAGTCATGGAACTCCTCAAAGTTGCTGGATGTGATGATGGGACTTTTTGTTTGTGCATACATCACAGACTTGCTTGGATCACACCATGTTGTTGGGGCCTTTGTGTATGGACTAATTTTGCCCAGTGGGAAGTTTGCCGATTTGTTGTTGGAAATGTTGGATGATTTTGTTACTGCAATTATTGTTCCTGTTTACTTTGCTAGTTTTGGCTTTAGACTAAACCTGGAGTCACTTTGGTCTGAAAACCACTCAGTGTTGCTTCCTCTCTTCATGGTGTTCTTGTTAGCCATACCAAAAATTTTGAGCTCTTTGCTGGTCACTGTCTACTATGGTATGTCTTCAAGAGATGGAGTTGGCCTTGGATTGCTCCTCAACACCAAGGGCATCATGGCAGTGATTCTTATAAGCATTGCCTGGGACAAAAGTGTACTATTTTCCAACCAAACTCTTACCATATCATATCATGCTCCTCTTTCAAATTCTTGCTTGATTTTGGACCCATATGCTTTCACAATCATGATCCTTGCAGTACTATTCATGACTACGGTGGTATCGCCCTTTATCAATGCCATCTACAAGCCGAAACTTCGGTTCAAGCAGACCCAGCAAAGGACTGTGCAGAAACTATGGTGCGAAGCAGAACTTCGAGTTGCAGCTTGTGTCCATAACTCTCACCAAGCCCTTGGCATGATCTATGTTCTTGAAGCCACAAATGCGACCAGAACTTCCCCTTTACATGTCTCAGTCCTTCACCTTGTGGAACTCACAAGACGCGGCACTGGCCTTCTTGTGGCACAAATCGACAACTCAAATGTTCAAGGGGGATCCTCAGAGCAGTATGGATCACAAGAAGAGTTTGAGACCATATGCAATGCATTCAACGAGTTTGTGGAGGAATACAAAGCTGTGAGATTTGACACATCAGGCATTGTTGCAACCTATGAGACAATCCATCAGGATATATACAATGTCACAGAAGAGAAACGAGCAAACCTTATTCTCCTTCCATTCCACAAAGAACTAAGCTCGGGAGAGTTAGAAACAACCAAAACAGCATTCTCTGACATAAACCAGAACGTGTTGCAGGCACCACCTTGTTCTGTGGGAATCCTTGTCAACCGTGGACTGAGGTCACTGTCCACTGCAACAATGAGCATCATTGTGATATTCATCGGAGGGCCTGATGATCGGGAAGCCTTGTCGATCGCATGGAGAATGGCATCACATTCAGCCACAAAGTTGCATGTAGTTAGGCTTCTGGTGTCAGGTACTGAGGTTGCAGAAGGAAAAGCATTCCAGAATGATTCCAGTGGAGTGTTATCTACAGAGATGGACAGTGTTATGCAGAAAGAGCTAGATGATGAACACATATTTCACTTCAGGCACAAAGGGTTGCACAACAGTGACTCCATCACATACTCAGAGAGAGAACTGAGGTTAGAAACTGGTGAGGAGATTCCTTTGATCCTCCATGAGATAGACCAAAAAGGGTGTGACTTGTACATTTTGGGACAAGGTAGTGGCAATAACTACACAGTTTTCAAAACGTTGTTGGAATGGTGTGACAGCCCTGAACTTGGGGTCATGGGGGACATTGTAGCTTCATCCAGTTTTGGCACAAACTCATCACTGCTTGTTGTGCAGCAATACACCATGGAGAGAAAGTCTAAACTTCATTGTAGCAGAAAACATCACACTAGTAAGGTCTGTGATGATATTTTGTGA 2517 0.4378 MTREGNATLNFIPEFACYNTTFDLSNIIWRSDNVISERVPLLSIQIAYNILASSFFHHILKQFHLPLTVAQMLGGVLLSSSFLGRIPGVFHMIYRPEGIMSVETFANIGIMYYVFLTGLEMNCDTILRSSKQAVVIAVASILIPALVGAGFFALHNDLAGGSSVALTAKGYMFWCAILSVTSFPVLARLLSDLKILYTRLGKDALTAAILIDAFGWVLFSLFIPFSHAGGKPLLSLICTLLFIAFCFCVVRPILARVVEHRMRSESWNSSKLLDVMMGLFVCAYITDLLGSHHVVGAFVYGLILPSGKFADLLLEMLDDFVTAIIVPVYFASFGFRLNLESLWSENHSVLLPLFMVFLLAIPKILSSLLVTVYYGMSSRDGVGLGLLLNTKGIMAVILISIAWDKSVLFSNQTLTISYHAPLSNSCLILDPYAFTIMILAVLFMTTVVSPFINAIYKPKLRFKQTQQRTVQKLWCEAELRVAACVHNSHQALGMIYVLEATNATRTSPLHVSVLHLVELTRRGTGLLVAQIDNSNVQGGSSEQYGSQEEFETICNAFNEFVEEYKAVRFDTSGIVATYETIHQDIYNVTEEKRANLILLPFHKELSSGELETTKTAFSDINQNVLQAPPCSVGILVNRGLRSLSTATMSIIVIFIGGPDDREALSIAWRMASHSATKLHVVRLLVSGTEVAEGKAFQNDSSGVLSTEMDSVMQKELDDEHIFHFRHKGLHNSDSITYSERELRLETGEEIPLILHEIDQKGCDLYILGQGSGNNYTVFKTLLEWCDSPELGVMGDIVASSSFGTNSSLLVVQQYTMERKSKLHCSRKHHTSKVCDDIL 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00861 838 Gene3D - 41 465 IPR038770 -
Vimu3g00861 838 Pfam Sodium/hydrogen exchanger family 51 451 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vimu3g00861 838 PANTHER CATION/H + ANTIPORTER 28 815 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00861 Vimu-Chr3 10195099 10197952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00861 17 814 Antiporter Super Family AT2G13620 34.606 3.64e-163 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00861 - - gmx:100792990 1154.04