Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00854 ATGTATTGGGGGAAAGTTTTGGGTGGCCAGATAGGTGGTGGAGGTGTGATGGAGGAGGAGGTATGGAGGAAGGGACCATGGACTGCTGAAGAAGACAGGTTGCTTGTTGAGTATGTCAGACTGCATGGTGAAGGAAGATGGAACTCTGTTTCTAGGCTTGCAGGGTTGAAAAGAAATGGGAAGAGCTGCAGATTGAGGTGGGTGAATTATCTGAGGCCTGATCTCAAGAGGGGACAGATAACACCACAAGAAGAGAGTATAATTCTGGAGTTGCATGCAAGGTGGGGAAACAGGTGGTCAACAATTGCAAGGAGTTTACCAGGAAGAACTGACAATGAGATAAAGAACTATTGGAGGACTCATTTCAAGAAAAAGGCTAAAAGTCCCTCTAATGCAGCTGAGAAGGCAAGAAATAGAGTTCTGAGGAAACAGCAATTTCAGCAGCAACAGTTGCAGCAGCAGCAGCAGCAGCAGCAACAGTATCAGGCACAACAACAGTTACAGTTCAACTTTGACATGAAAGGCATCATGGCCTTGCTTGAGGATAACAACACATGTAGAGCACCTTATGCAGCCTCTCAATCTAGACAAGAAATGATCAACATGCAGCAAAACACCACAGAAGAGCAAGGATTCTTGCACTCCATGCTCAATGGCAACTTTTCTGCACCAGAAATCTCATCTGAAGAAACTTTTTTGAATGGTCTTTGGAACTTGGATCATGGGAATTTCACTGTAGCTAGTGCAGCAAGCAAAGTTGGTCTATACAATTTAGTTGCTCCCTTCTGTTAA 792 0.4444 MYWGKVLGGQIGGGGVMEEEVWRKGPWTAEEDRLLVEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSNAAEKARNRVLRKQQFQQQQLQQQQQQQQQYQAQQQLQFNFDMKGIMALLEDNNTCRAPYAASQSRQEMINMQQNTTEEQGFLHSMLNGNFSAPEISSEETFLNGLWNLDHGNFTVASAASKVGLYNLVAPFC 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00854 263 FunFam Myb transcription factor 24 76 - -
Vimu3g00854 263 CDD SANT 81 122 IPR001005 -
Vimu3g00854 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Vimu3g00854 263 SMART sant 23 73 IPR001005 -
Vimu3g00854 263 SMART sant 76 124 IPR001005 -
Vimu3g00854 263 Gene3D - 81 125 - -
Vimu3g00854 263 FunFam MYB-related transcription factor 81 125 - -
Vimu3g00854 263 ProSiteProfiles Myb-like domain profile. 23 71 IPR001005 -
Vimu3g00854 263 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Vimu3g00854 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 71 IPR017930 -
Vimu3g00854 263 CDD SANT 26 71 IPR001005 -
Vimu3g00854 263 Gene3D - 24 76 - -
Vimu3g00854 263 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 210 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vimu3g00854 263 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Vimu3g00854 263 Pfam Myb-like DNA-binding domain 77 121 IPR001005 -
Vimu3g00854 263 Coils Coil 137 164 - -
Vimu3g00854 263 SUPERFAMILY Homeodomain-like 23 118 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00854 Vimu-Chr3 10091506 10092761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00854 17 263 MYB Transcription Factor Family AT4G13480 56.044 1.58e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu3g00854 Myb_DNA-binding 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00854 K09422 - gmx:100795981 400.979