Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00853 ATGCAGCTCGGCTTCGCCATGCTCTGCGCCGGCTCGGTCCGCGCCAAGAACACCATGAACATCATGCTCACCAACGTGCTCGACGCCGCTGCCGGCGGTATCTTCTACTACCTCTTCGGCTTTGCCTTCGCCTGGGGCTCCCCTTCCAACGGCTTCATCGGGAAACATTACTTCGGCCTCACAGACCTCCACTCCGAGGGGTTAGACTACAGCAACTTCCTTTACCAGTGGGCCTTCGCCATCGCCGCTGCCGGCATCACCAGCGGCTCCATCGCCGAGCGAACCCAGTTTGTCGCGTACCTAATCTACTCCTCCTTCCTCACCGGCTTCGTCTATCCGGTAGTCTCTCACTGGTTCTGGTCCCCTGACGGTTGGGCATCCGCTATCAAGCAAAGCGATCTTTTATTATCTACCGGCGTAATCGACTTCGCCGGCTCCGGCGTTGTCCACATGGTCGGCGGTGTGGCAGGACTCTGGGGCGCCCTTATCGAGGGTCCACGAATCGGCCGATTCGATCACGCGGGACGCGCGGTGGCCTTACGTGGCCACAGCGCCTCGTTAGTCGTGCTCGGTACCTTCATGCTGTGGTTCGGTTGGTACGGTTTCAACCCTGGTTCATTCAACAAAATCTCAGTCGCTTATGACTCGGGGACCAAGTATGGTCAATGGAGTGCGGTTGGGAGAACCGCGGTTACCACAACTCTAGCGGGGTCAACGGCTGCGTTGACCACGCTCTTCGGGAAACGCCTGATATCTGGTCATTGGAACGTCACCGATGTCTGCAACGGTTTGCTGGGAGGGTTCGCCGCCATCACAGCCGGTTGTTCTGTGGTGGAGCCGTGGGCGGCTATCGTGTGTGGTTTTGTGGCGTCCCTTGTTCTGATCGGGTGTAACAAACTGGCGGAGAAGGTTAGGTTTGACGATCCTTTAGAGGCGGCGCAGTTGCACGGAGGGTGTGGCGCGTGGGGGGTGCTTTTCACGGCGCTGTTCGCGAAGAAGGAGTACGTGTTGCAGGTTTACGGGGAAGGGAGGAAGCACGGGTTGTTTATGGGTGGTGGATGGAATTTGTTGGGGGCGCACGTAATTCAGATTTTGGTGATTGTTGGATGGGTTAGTGCGACGATGGGGCCACTCTTCTGGGGGCTTAAAAAATTGAAGCTTTTAAGGATTTCATCGGAGGATGAACTGGCGGGTATGGATCTAACCCGGCATGGAGGGTTTGCCTATGCCTACGAAGATGATGAGACTCAGAAGCATGGGATTCAGTTGAGGAAGATTGAACCCAACGCCTCTACCCCAACCACTGATGGGGGATTATGA 1320 0.5674 MQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGIFYYLFGFAFAWGSPSNGFIGKHYFGLTDLHSEGLDYSNFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSPDGWASAIKQSDLLLSTGVIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDHAGRAVALRGHSASLVVLGTFMLWFGWYGFNPGSFNKISVAYDSGTKYGQWSAVGRTAVTTTLAGSTAALTTLFGKRLISGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVASLVLIGCNKLAEKVRFDDPLEAAQLHGGCGAWGVLFTALFAKKEYVLQVYGEGRKHGLFMGGGWNLLGAHVIQILVIVGWVSATMGPLFWGLKKLKLLRISSEDELAGMDLTRHGGFAYAYEDDETQKHGIQLRKIEPNASTPTTDGGL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00853 439 NCBIfam ammonium transporter 1 409 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vimu3g00853 439 Gene3D Ammonium transporter AmtB like domains 1 428 IPR029020 -
Vimu3g00853 439 FunFam Ammonium transporter 1 423 - -
Vimu3g00853 439 ProSitePatterns Ammonium transporters signature. 142 167 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vimu3g00853 439 Pfam Ammonium Transporter Family 1 409 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vimu3g00853 439 PANTHER AMMONIUM TRANSPORTER 1 412 - -
Vimu3g00853 439 SUPERFAMILY Ammonium transporter 1 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00853 Vimu-Chr3 10034458 10037433 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00853 1 434 Inorganic Solute Cotransporters AT4G13510 81.922 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00853 K03320 - gmx:100818774 794.653