Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00851 ATGGCTGCCACTGCTGCAGGCATAGCTTCGTTGTTTTCTTCTTCCATTAACAACATCAAATGTCTTCGTTCCAAGCACTGCTCCATGATGGATCCCCTTATGACAGCAATGCCGTCAAACCGCATGTCACACTTGGTCGAACCTTTGTCCATCGGAGGTACCATGTCGCATAGGTTGTGGGGGCCTAGAATCTCTGCTGCTGTTGCACAAGAAGAGCTGGTTGCTGCGGATGATGCTGCTTTCATTGAAGAAGAGAAGGTGGAGGAGAATGAAGGGGAAGTGGTGGCAGAACAAGACTCAGATGAATCCTTTGCTGACACTAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTATGGTAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGCATTGAAGACTGTAATACAGTGATAGAAAATCTTGACGGAAAAGAATTCATGGGCAGAACCTTGAGGGTGAACTTCTCTAACAAGCCAAAACCAAAAGAACCCTTGTACCCTGAAACTGAGCATAAACTCTTTGTTGGGAATCTATCATGGTCAGTAACTAATGAGATTTTGACACAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTATATGATGGAGAAACTGGAAGATCACGTGGCTATGGCTTTGTTTGTTTTTCAACAAAAGCAGAGATGGAATCTGCTCTCGAAGCCTTGAATGATGTGGTATTTTACTCCCCAGCACTTCATTCTTGTACTGGTTGTGCTTTTCTAAACTGA 840 0.4357 MAATAAGIASLFSSSINNIKCLRSKHCSMMDPLMTAMPSNRMSHLVEPLSIGGTMSHRLWGPRISAAVAQEELVAADDAAFIEEEKVEENEGEVVAEQDSDESFADTKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNTVIENLDGKEFMGRTLRVNFSNKPKPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKAEMESALEALNDVVFYSPALHSCTGCAFLN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00851 279 Gene3D - 68 187 IPR012677 -
Vimu3g00851 279 SMART rrm1_1 108 181 IPR000504 GO:0003723
Vimu3g00851 279 SMART rrm1_1 199 272 IPR000504 GO:0003723
Vimu3g00851 279 Gene3D - 188 270 IPR012677 -
Vimu3g00851 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 260 IPR000504 GO:0003723
Vimu3g00851 279 SUPERFAMILY RNA-binding domain, RBD 107 266 IPR035979 GO:0003676
Vimu3g00851 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Vimu3g00851 279 PANTHER OS02G0815200 PROTEIN 57 262 - -
Vimu3g00851 279 FunFam 31 kDa ribonucleoprotein, chloroplastic 69 188 - -
Vimu3g00851 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 265 IPR000504 GO:0003723
Vimu3g00851 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00851 Vimu-Chr3 9964805 9966204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00851 102 264 Eukaryotic Initiation Factors Gene Family AT1G71770 29.448 9.87e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00851 - - gmx:100820203 428.713