Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00846 ATGGCAACCCAAATGAGCAAGAAGAGAAAGTTCGTGGCTGATGGAGTGTTTTTCGCGGAACTGAATGAGGTTCTGACACGAGAGCTAGCGGAGGATGGTTACTCTGGTGTGGAAGTGAGGGTTACGCCGATGCGCACTGAAATCATCATCAGAGCTACAAGAACCCAAGCTGTACTCGGTGAGAAGGGAAGGAGAATCAGAGAACTTACATCGGTGGTTCAGAAGAGATTCAAGTTTCCAGAGAACAGCGTTGAACTCTACGCTGAGAAAGTCAACAACAGGGGACTTTGCGCAATAGCTCAGGCTGAGTCTCTTCGCTACAAGCTCCTCGGGGGACTTGCGGTGCGCAGGGCTTGCTATGGTGTTTTGAGGTTTGTCATGGAGAGTGGTGCCAAGGGATGTGAGGTGATTGTGAGTGGTAAATTGAGAGCCCAGAGGGCAAAATCCATGAAGTTTAAGGATGGCTACATGATTTCTTCTGGGCAACCTGTCAAGGATTACATTGACTCTGCAGTGAGACACGTGCTCCTCAGACAGGGTGTTCTTGGCATTAAGGTGAAGATTATGCTTGATTGGGATCCTAAAGGGAAGCAGGGTCCTACAACTCCTCTCCCTGATATTGTCACAATCCATACTCCAAAAGAGGAAGAGGAATACATCCGGCCTGCTCCAGTTCTGGCCAATGATATCGAGGTCCCTGTGGCTTGA 708 0.4915 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTTPLPDIVTIHTPKEEEEYIRPAPVLANDIEVPVA 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00846 235 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Vimu3g00846 235 Pfam KH domain 20 93 IPR004044 GO:0003723
Vimu3g00846 235 CDD KH-II_40S_S3 5 95 - -
Vimu3g00846 235 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Vimu3g00846 235 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 198 - -
Vimu3g00846 235 FunFam 40S ribosomal protein S3 1 92 - -
Vimu3g00846 235 NCBIfam 30S ribosomal protein S3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Vimu3g00846 235 FunFam 40S ribosomal protein S3 93 228 - -
Vimu3g00846 235 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Vimu3g00846 235 Gene3D - 93 219 IPR036419 -
Vimu3g00846 235 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Vimu3g00846 235 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Vimu3g00846 235 Gene3D - 1 91 IPR015946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00846 Vimu-Chr3 9843021 9844781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00846 1 235 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 88.085 7.09e-154 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00846 K02985 - gmx:100799156 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02434 6 21228926 21230028 Vimu3g00846 3 9843021 9844781 PCT