Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00844 ATGGGGCGTGTTAGGACGAAGACAGTGAAGAAGTCGTCAAGGCAAGTGATAGAGAGGTATTACTCTCGCATGACGCTGGACTTCCACACCAACAAGAAGGTTCTGGAAGAGGTCGCCATCATTCCCTCAAAGAGGCTCCGTAACAAAATCGCCGGCTTCTCCACCCACCTTATGAAGCGCATCCAGAAGGGACCGGTGCGCGGCATCTCCCTCAAGCTTCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTCGTCCCCGAAGTCTCTGCCATCCGCACCGACCAGATTGAGGTCGACAAGGAGACCATCGACATGCTCGCCGCCCTCGGAATGTCCGATGTCCCCGGCGTCGTTAAGGTCGATCCGGTTGCCGTACAAGCACCGCCCGCATTCGGCCGCGGCGCCGGCGGAAGGAGGTATTAG 423 0.591 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPEVSAIRTDQIEVDKETIDMLAALGMSDVPGVVKVDPVAVQAPPAFGRGAGGRRY 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00844 140 FunFam 40S ribosomal protein S17 1 62 - -
Vimu3g00844 140 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Vimu3g00844 140 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Vimu3g00844 140 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Vimu3g00844 140 PANTHER 40S RIBOSOMAL PROTEIN S17 1 122 IPR001210 GO:0003735|GO:0005840|GO:0006412
Vimu3g00844 140 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Vimu3g00844 140 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00844 Vimu-Chr3 9819032 9819454 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00844 1 140 Cytoplasmic Ribosomal Protein Gene Family AT2G04390 82.979 5.30e-82 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00844 K02962 - gmx:100819067 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00844 3 9819032 9819454 Vimu3g00844 3 9819032 9819454 ECH