Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00840 ATGTCGATAAACCACTACTCCATGGACCTTCCCGAAACAACACTGTGGTGGCCCCAACAACAGCATCATCATCAGCAGCAGCAACCCATCTTAATGGAAGCAACCCCGAATCCCTCCTCCACTTCCTGGCCCTCCGCAGACCCTCTGGGTCTCAACCTCAACCACCAAAACGACGACGTCGAAGAAGACGAAGAAGAAGAGGACCAAACAACAACCACTACACAGCAAGAGGAAACGGAAGACGAGAAGGAACCCATGTTCGAGAAGCCTCTAACTCCCAGCGACGTGGGGAAGCTCAACCGCCTCGTAATCCCCAAGCAGCACGCCGAGAAGTACTTCCCTCTCAGCGGTGGCGGTGGCGGCGACTCGGCCGAATGCAAGGGCCTTCTATTGAGTTTCGAGGACGAGTCGGGTAAGTGCTGGCGGTTTCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTGACCAAAGGGTGGAGCCGCTACGTCAAGGACAAGCGCCTCGACGCTGGCGACGTTGTCTTGTTCGAGCGACACCGCGCCGACGCCCACCGCCTCTTCATCGGATGGAGACGCCGGCGACACGGCGACACATCGCCGGTGCACGTTAGCGGCAGGGCGGTGGGGCACGGGAAGAGTGGCGACGGGAGTAGTAAGAATGAGGGTGGCGGCGGCACTGGTGTTGGTTTGGGATGGACCAGAGGGTTCTATTCTGCGCATGCTTATCCTACGCATCAGCAGCAGCTGCATAATCATCAGCCCTCGCCATACCAATATGACTGTCTTCATGCAGGTACTGAGAAATGCACGTGTTGGAATGTTACAGGAAGAGGGTCGGAAGGTGAGAGAGAAAGAGAAAGGAGCATAGCAGAGGGAAAGAGTCGGAGTTCAAGGGTACTTAGGCTTTTTGGGGTGAACATGGAATGCGAAACTGAACATGATTCTGGACCCTCCACACCCCAATCTTCCTACAATACTACCAACATGCCCTCCTCACAGGGCACACTTAACCATCACCATTTCTACCATCCTCACCAACCTTACTACTACTACTACTACTAG 1065 0.5512 MSINHYSMDLPETTLWWPQQQHHHQQQQPILMEATPNPSSTSWPSADPLGLNLNHQNDDVEEDEEEEDQTTTTTQQEETEDEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGGGGGDSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRADAHRLFIGWRRRRHGDTSPVHVSGRAVGHGKSGDGSSKNEGGGGTGVGLGWTRGFYSAHAYPTHQQQLHNHQPSPYQYDCLHAGTEKCTCWNVTGRGSEGERERERSIAEGKSRSSRVLRLFGVNMECETEHDSGPSTPQSSYNTTNMPSSQGTLNHHHFYHPHQPYYYYYY 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00840 354 SMART B3_2 87 195 IPR003340 GO:0003677
Vimu3g00840 354 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 22 321 IPR044800 GO:0003700
Vimu3g00840 354 MobiDBLite consensus disorder prediction 58 75 - -
Vimu3g00840 354 SUPERFAMILY DNA-binding pseudobarrel domain 82 194 IPR015300 -
Vimu3g00840 354 MobiDBLite consensus disorder prediction 198 226 - -
Vimu3g00840 354 ProSiteProfiles B3 DNA-binding domain profile. 87 195 IPR003340 GO:0003677
Vimu3g00840 354 MobiDBLite consensus disorder prediction 19 52 - -
Vimu3g00840 354 MobiDBLite consensus disorder prediction 19 94 - -
Vimu3g00840 354 CDD B3_DNA 85 185 IPR003340 GO:0003677
Vimu3g00840 354 Gene3D - 75 203 IPR015300 -
Vimu3g00840 354 Pfam B3 DNA binding domain 87 194 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00840 Vimu-Chr3 9763039 9764852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00840 1 317 RAV Transcription Factor Family AT5G06250 41.304 3.17e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu3g00840 B3 8.7e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00840 K09287 - gmx:100795470 381.719