Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00824 ATGGCAGCAGAAATGGTTACAGGTATTCTTCTTTCTACTTTCCTCGAGAGGACTATCGACACTTTGGCTTCCCGTCTTGTCCACATATTATTTCAAAGAAAGCATAAGAAGCAACTCAACAACTTGAAGATGAAGTTCCTTGCCATTGATGTCGTGGCTCTTGATGCAGAACGTAAACAGTTCAAAGATCCACGAGTCAGAGATTGGCTTCTCAGGGCCAAAGATGTTGTGTTTGATGCAGAGGATCTCTTGGATGAGATAGATTATGAACTCTCCAAAAGCCAGGCGGAAGTTGAGTCTCAGACTACTAACAAGGTTTGGAATTCCCTCAATTCTTCTTTTGCCAGTTTCTTTGAAATAGAAATTGAATCCAGGATGGAACAAGTCATTGAAGACCTAGAAGATCTTGCAAACGAAAGTTATATTCTAGGTTTGGAAAAGGGTGGTGGTGTTGGGGTTCGATCAGTATCGGGTAGTAAATTAACATATACATCTTTACCAAATGAAAGTGTTATCTATGGAAGAGATGATGACAAAGAATTTGTCTTTAACTGGCTCATATCGGACACTCCCAACAACCTATCTATACTTTCTATTGTGGGCATGGGTGGGATGGGTAAGACCTCTCTTGCCCAACATGTATTCAATGACCCAAGACTTGAAGGTAAATTTGATACTAAAGTTTGGGTCAGTGTTCCACAGGAATTTGATGTTCTCAAAGTATCAAGATCAATTCTTGACACAATAACTGCTTCAACTGATCATAGTATACAGCAGGAAGTAATTCAGAAAAGATTGAAAGAAGAACTTATGGGCAAGAAATTTTTTCTCGTTTTGGATGATGTTTGGAACGAAAGACCATCTAAATGGGAAGATTTGCAGAAGCCTCTAGTTTTCGGAGGCCAAGGTAGTAGAATTCTTATCACTACACGGAGTGAGAAGGTTGCTATTACCATACGATCAGAAAAGCACTTCTTGCAGGTATTAAAAGAAGATTATTGTTGGGACTTGTTGGCAAAGCATGCATTCGAAAATGCTAATAGGCAACCACACCCAGACTTCATAGAGATTGGTAAGAAGATAGTGCAAAAATGTAATGGGCTTCCTTTAGCCTTAAAAACTATGGGAAGTCTATTACACAATAAATCATACCTTTGGGAATGGGAAAGTATTATGAAAAGTGAGATATGGCATTTTTCAGAAAATGAGAGTGATATACTCCCTGCTTTAAGACTGAGCTATTTCCACCTTCCTTCTCATTTGAAGAAATGCTTTGCTTTTTGTGCCTTATTTCCCAGAGGTTATCGGTTTGACAAGGAGTGTTTAATTCAATTGTGGATGGCTCAAAATTTTCTAGAAAACCCTCTAGAGAAAAAGAGTCCTAAAGAAGTTGGCGAAGAATATTTCAATGATCTATTGTCTTGGTCCTTCTTTCAACAGTCAAGCAACGAAGAGGAAAAGCGTTTTATCATGCATGACCTTCTAAACGATTTGGCAAAATACGTCTGTGAGGACATATGCATCAGGTTAGGAGTTGATGAACCAAAAGATATACCCAAAACAACCCGTCATTGTTCATTTTCATCCTCTAAACTATGCTTTGATGGGTTTGGGAGTTCGATTGATTCTCAAAAGTTGCATACATTTACGGCAACAGATCAGGGTTGGCATTGGAATTGCAAGATGTCGATAGATGACTTGTTCTCCAGATTTAAGTTGATACGAGTCTTATCTTTGTGTTATTGTCGTAGCCTTACGGAGGTGCCTAAATCTGTAGGAAATCTTAAGCATCTTCGTTCATTAGATCTATCTTGGACTCAAATAGAAAATCTACCGGAATCAATAAGTTCACTCTTCAAATTGCAAACACTGAAGCTAAACAATTGTCGAAAATTAAAGGAGCTTCCCTCATGTTTACATCAACTCGATAATTTGCGTTGTCTTGAATTAGTAGGTATTGGAGTGAAAAATGTGGTAACACATTTGGGAAAACTGAAGAATCCTCAAGTATCCATAAGTTCATTTCATGTTGAGAAAAGTAAAAAAATCAATATTCAGCAATTAGGAAAACTCAATCTTTACGGAAGTCTAACAATTGATGATCTGCAGAATATTGAGAATCCCTCTTATGCATTAGAAGTAGATTTGAAGAACAAACCACATCTTGTGGAGCTACGGTTAACATGGAATTTCATTGGCAGCTCTTCCGTGGATTCCGAAAAAGCTGAGGATGTAATTGAGAATCTACGACCTTCAAAATACTTGAAGAAGTTGTCAGTAAGTAACTATATTGGTAAACAATTTCCAAATTGGTTACTCCATAATTCATTACCGAATCTGTTGTCCTTAGTGTTGGAGGAATGTAAATCTTGCCAACGTTTACCTCCGCTTGGACTTTTGCCATTTCTCAAGTACTTGCAGATTTCAGGGTTTGATGAGATAGTGAGTATTGATGCTGATTTTCATGGGAACAACTTTTGTTCATTTAAATCCCTTCAAAAATTGTATTTCTCTAATATGATGCAATGGGAAAAGTGGGACTGCCAAGTTGTGACAGGTGCTTTTCCACGTCTAGAATTTTTTTCCATAGGAAATTGTCCCAAGCTGAAAGGACACCTGCCAAAGTTTGTTGCTTTAAAATCCCTATATGTCTTTCATTGCGAACAACTTGAAGCTTTGATGGTGAGTGCGCTAGAATTACGTCTACAAGATTGTGGAAAGCTGCAGTTGGAGCGATCTACAATGAAAAAGCTCACAATGGATGAGGACGGCATGGCAGCATCATTGGTGGCAATGGTTGAAAGTATGCTATTCGACACTTCTCTTGAAAACCTTTCCTTTTGTTCACTTCTAGAGTCAATAAGTGATGATTGTGTCTCTCTAAGGATCTTTCCACTGGATTTCTTCCCAACACTCAGGACCCTTGAACTCAGTGGATTTTCTAATCTACATATGATTTCACAGGATCACGTTCACAATCATCTCCAGCATCTGACAATCAAAGACTGTCCAAGACTTGAGTCGTACGGAGCTTTTAGATACAGTCCTTTCTTTGAAAGCTTAAGGATTGAAAAATTAGAGGTGGAATGTTTTCCTGATGAAGAACTTTCATCTCTTGGAACACTGCGTCTTTGGAACTGTCCCAACCTCCAATGCTTACCGGAGGAGGGTCTTCCCAAATCAATTTCGTTTTTTGAAATACGAGAGTGTCCTTTGCTGGAACAGCGTTGTCATAAAGGAGGCGAAGACAGGGAAAAGATTGCTCACATTCGAAACCTATTTATATGTCCTGAATCACCATCTGTACAGGATAAGTTTTTCCAGGTTGAACATCTTGCAGGTGGTGAAATACCATCAGCATACCTATATTTACTAAAGATTATGCAGAGTCGCATAGCGCTGTGTGCTATGCGAATGTTTGCGGTCATGCTGTCAGGAAAATTCGCTCAGCGCATCACAGGATTGAGTGTTTTTTATGTTTTTGACGTTTTGAGAGTTCCGGACGTCCGTTTTGGACGTTCTTTAGTTCGTTATGGGGGTTTTTGA 3546 0.388 MAAEMVTGILLSTFLERTIDTLASRLVHILFQRKHKKQLNNLKMKFLAIDVVALDAERKQFKDPRVRDWLLRAKDVVFDAEDLLDEIDYELSKSQAEVESQTTNKVWNSLNSSFASFFEIEIESRMEQVIEDLEDLANESYILGLEKGGGVGVRSVSGSKLTYTSLPNESVIYGRDDDKEFVFNWLISDTPNNLSILSIVGMGGMGKTSLAQHVFNDPRLEGKFDTKVWVSVPQEFDVLKVSRSILDTITASTDHSIQQEVIQKRLKEELMGKKFFLVLDDVWNERPSKWEDLQKPLVFGGQGSRILITTRSEKVAITIRSEKHFLQVLKEDYCWDLLAKHAFENANRQPHPDFIEIGKKIVQKCNGLPLALKTMGSLLHNKSYLWEWESIMKSEIWHFSENESDILPALRLSYFHLPSHLKKCFAFCALFPRGYRFDKECLIQLWMAQNFLENPLEKKSPKEVGEEYFNDLLSWSFFQQSSNEEEKRFIMHDLLNDLAKYVCEDICIRLGVDEPKDIPKTTRHCSFSSSKLCFDGFGSSIDSQKLHTFTATDQGWHWNCKMSIDDLFSRFKLIRVLSLCYCRSLTEVPKSVGNLKHLRSLDLSWTQIENLPESISSLFKLQTLKLNNCRKLKELPSCLHQLDNLRCLELVGIGVKNVVTHLGKLKNPQVSISSFHVEKSKKINIQQLGKLNLYGSLTIDDLQNIENPSYALEVDLKNKPHLVELRLTWNFIGSSSVDSEKAEDVIENLRPSKYLKKLSVSNYIGKQFPNWLLHNSLPNLLSLVLEECKSCQRLPPLGLLPFLKYLQISGFDEIVSIDADFHGNNFCSFKSLQKLYFSNMMQWEKWDCQVVTGAFPRLEFFSIGNCPKLKGHLPKFVALKSLYVFHCEQLEALMVSALELRLQDCGKLQLERSTMKKLTMDEDGMAASLVAMVESMLFDTSLENLSFCSLLESISDDCVSLRIFPLDFFPTLRTLELSGFSNLHMISQDHVHNHLQHLTIKDCPRLESYGAFRYSPFFESLRIEKLEVECFPDEELSSLGTLRLWNCPNLQCLPEEGLPKSISFFEIRECPLLEQRCHKGGEDREKIAHIRNLFICPESPSVQDKFFQVEHLAGGEIPSAYLYLLKIMQSRIALCAMRMFAVMLSGKFAQRITGLSVFYVFDVLRVPDVRFGRSLVRYGGF 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00824 1181 Gene3D Ribonuclease Inhibitor 899 1097 IPR032675 -
Vimu3g00824 1181 FunFam Probable disease resistance protein At5g66910 328 413 - -
Vimu3g00824 1181 Gene3D - 413 501 IPR036388 -
Vimu3g00824 1181 Gene3D Ribonuclease Inhibitor 683 878 IPR032675 -
Vimu3g00824 1181 PANTHER DISEASE RESISTANCE PROTEIN RP 65 905 IPR044974 GO:0006952
Vimu3g00824 1181 SUPERFAMILY L domain-like 491 888 - -
Vimu3g00824 1181 Gene3D - 153 328 IPR027417 -
Vimu3g00824 1181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 428 IPR027417 -
Vimu3g00824 1181 Pfam Rx N-terminal domain 12 101 IPR041118 -
Vimu3g00824 1181 Coils Coil 119 139 - -
Vimu3g00824 1181 Gene3D - 329 412 IPR042197 -
Vimu3g00824 1181 Pfam NB-ARC domain 176 393 IPR002182 GO:0043531
Vimu3g00824 1181 FunFam Probable disease resistance protein At1g61300 157 324 - -
Vimu3g00824 1181 Gene3D - 12 136 - -
Vimu3g00824 1181 PRINTS Disease resistance protein signature 616 632 - -
Vimu3g00824 1181 PRINTS Disease resistance protein signature 269 283 - -
Vimu3g00824 1181 PRINTS Disease resistance protein signature 196 211 - -
Vimu3g00824 1181 PRINTS Disease resistance protein signature 365 379 - -
Vimu3g00824 1181 SUPERFAMILY RNI-like 824 1066 - -
Vimu3g00824 1181 Gene3D Ribonuclease Inhibitor 524 664 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00824 Vimu-Chr3 9633856 9640925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00824 186 896 WRKY Transcription Factor Family AT5G45050 22.975 1.60e-10 63.9