Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00822 ATGAAGGTGGTCGCAGCGTATTTACTCGCCGTTCTCGGAGGCAACCAGAGCCCCTCCGCCGCTGTTATCAAGGAAATTCTCGGCTCCGTTGGTGCCGAGGCAGATAGTGACAGGATAGAACTATTTTTATCTGAAATTAAGGGAAAGGATATAGTTGAGGTTATTGCTGCCGGTAGGGAAAAACTTGCTTCAGTGCCCTCTGGTGGTGGTGGTGCTGTTGCTGTCGCTGCTGCGCCTGGGGGAGGTGGTGCTGCTGCTGCCCCTGCCGCTGAGGCAAAGAAAGAGGAAAAAGTCGAGGAGAAAGAGGAATCCGATGATGTAAGTGTTCTTATACCCTTGCTGCTTCATTCATCTTTAGGTATTGTAGTTGTGATGCTCTGTATGGTTTTAAAATTTTGA 399 0.4912 MKVVAAYLLAVLGGNQSPSAAVIKEILGSVGAEADSDRIELFLSEIKGKDIVEVIAAGREKLASVPSGGGGAVAVAAAPGGGGAAAAPAAEAKKEEKVEEKEESDDVSVLIPLLLHSSLGIVVVMLCMVLKF 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00822 132 Coils Coil 130 132 - -
Vimu3g00822 132 MobiDBLite consensus disorder prediction 79 105 - -
Vimu3g00822 132 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 106 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vimu3g00822 132 Gene3D - 1 59 IPR038716 -
Vimu3g00822 132 Hamap 50S ribosomal protein L12 [rpl12]. 2 106 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vimu3g00822 132 FunFam 60S acidic ribosomal protein P2 1 59 - -
Vimu3g00822 132 MobiDBLite consensus disorder prediction 90 105 - -
Vimu3g00822 132 Pfam 60s Acidic ribosomal protein 17 106 - -
Vimu3g00822 132 CDD Ribosomal_P2 1 67 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00822 Vimu-Chr3 9609423 9610168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00822 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 74.286 2.22e-29 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00822 K02943 - gmx:100499761 110.153