Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00812 ATGGTGGTGGCGGAGTCTGAGATGAACTCACAAAACGACGCTGAATCTCCGATAGAGTTGGAACAACAGCATGACGTCAACAAGAATCACCCATTCTATTCACTGGGAAGAGAAGCTTCTTCCATCTACTCCATCACCCTCGACGAGTTCCAACACACGCTATGGGAGAGTGGCAAGAACTTTGGGTCCATGAACATGGACGAGTTTCTCAGCAGCATATGGTGTGCAGAAGAAACTCAAATTTTAAACAATAGCAACAGTAGCATCAACTTTAGCAGCTTCTCACTGTGTGAAGCTTCCGCAGAAAAGGGGTTGATAAGGAAGCAACCGAGCCTTCCTCGGCAAGGATCTCTAACACTTCCTGTACCTTTGTGTAGGAAAACAGTGGACGAGGTTTGGTCTGAGATACACAAAGGACAACAACAACGGCAACCACAGAAAAACAACGACAATAACTGTGCAAGTGTTAATAATGATAACAATGCTCAAAATACCGAATCTGCCCACCGCCAACCTACCTTTGGAGAGATGACTTTGGAGGACTTCTTGGTAAAAGCTGGGATAGTTAGAGAACAGTGTGCCACAACGCCAGTTCCAGCTTCTACAAGTCAAAATCACCATTTGCAGCAGTATGGCTTCTTTCCTAATAACAACCGTACAATGGACCCGTCTTTTGTCGGAAGGCAGATGATGGGGATTGGTGGCGGCGGTGTCGGCGGTAATGCTGGTGGGAATGTGGTTAGACCACCTTATCAGGCGGTGCCTAAGGGTGGTGGTGGTGGCGGTGCAGTTGGACAGTCTTCTGGGTATCCGGCGGCAGTGCCGGTGGTGAATGGTGGCGGTGGTTACGAGGCAGTGAAGAACATGGGAGTGGTGGCGCCGGTGAGCCCGGTTTCGCCGGAGGGGATAGGTACTGGTGAAAAGTTTGGTTGCCGATTTGGGATGGACAAAGTCGTGTCAAGAGGGAGAAAGAGGGTGTTTGATGGGCCTGTGGAGAAGGTGGTGGAGAGAAGACAGAGGAGGATGATCAAGAACAGAGAATCAGCAGCCAGATCCAGAGCAAGAAAACTGGCATACACAGTTGAATTAGAAGCAGAATTGACCCAGTTGAAAGAAGAGAATGCCGAACTTAAACTGTCACTGGCTGATCTTGAAAGGAGAAGAAAGCAACAGTCACCTTTTGTGCAGCACTCAGAGGAAGGGAATTGGAGAGTTCAAAACAACCTTGAAAAGGCCAAAAACAAATCGAGATCATTGAGAAGGACCATGAAGAAAGGACTATTGGCTGTGGTGCATCTTCTTGTGTTTTTTCTTGGAAAGACTAAGAAGAAAGCAGGACATAGAAAAAACACTGAAATTTTAATGTCAAAGGATTAG 1377 0.4728 MVVAESEMNSQNDAESPIELEQQHDVNKNHPFYSLGREASSIYSITLDEFQHTLWESGKNFGSMNMDEFLSSIWCAEETQILNNSNSSINFSSFSLCEASAEKGLIRKQPSLPRQGSLTLPVPLCRKTVDEVWSEIHKGQQQRQPQKNNDNNCASVNNDNNAQNTESAHRQPTFGEMTLEDFLVKAGIVREQCATTPVPASTSQNHHLQQYGFFPNNNRTMDPSFVGRQMMGIGGGGVGGNAGGNVVRPPYQAVPKGGGGGGAVGQSSGYPAAVPVVNGGGGYEAVKNMGVVAPVSPVSPEGIGTGEKFGCRFGMDKVVSRGRKRVFDGPVEKVVERRQRRMIKNRESAARSRARKLAYTVELEAELTQLKEENAELKLSLADLERRRKQQSPFVQHSEEGNWRVQNNLEKAKNKSRSLRRTMKKGLLAVVHLLVFFLGKTKKKAGHRKNTEILMSKD 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00812 458 CDD bZIP_plant_BZIP46 337 391 - -
Vimu3g00812 458 MobiDBLite consensus disorder prediction 1 20 - -
Vimu3g00812 458 MobiDBLite consensus disorder prediction 1 17 - -
Vimu3g00812 458 MobiDBLite consensus disorder prediction 136 174 - -
Vimu3g00812 458 MobiDBLite consensus disorder prediction 138 172 - -
Vimu3g00812 458 SMART brlzneu 333 397 IPR004827 GO:0003700|GO:0006355
Vimu3g00812 458 Coils Coil 402 422 - -
Vimu3g00812 458 SUPERFAMILY Leucine zipper domain 337 387 IPR046347 GO:0003700|GO:0006355
Vimu3g00812 458 Coils Coil 360 387 - -
Vimu3g00812 458 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 340 355 IPR004827 GO:0003700|GO:0006355
Vimu3g00812 458 Pfam bZIP transcription factor 337 388 IPR004827 GO:0003700|GO:0006355
Vimu3g00812 458 Gene3D - 335 392 - -
Vimu3g00812 458 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 335 387 IPR004827 GO:0003700|GO:0006355
Vimu3g00812 458 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 37 406 IPR043452 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00812 Vimu-Chr3 9412813 9415422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00812 1 391 bZIP Transcription Factor Family AT2G36270 48.630 7.54e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu3g00812 bZIP_1 8.4e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00812 K14432 - gmx:106794959 526.939