Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00805 ATGCTTGGGATCTTGAGAGAGAAGAAGTTGTATGCCAAGTTGTCAAAGTATGAGTTATGGATGCAAAAGGTTCAAGTTTTTGGGCATGTGATATTGACTCAAGGCATATTAGTGGATCCATCTAAAGTTGAGGCAATGTTGTTGGGTACTCAAGCAGGAGAAGAAGGTAGTGTGACTTATGCTTTAAGGCAACTAAAGATTCATGAGAAGAATCATCCTACTCATGATTTGAAGTTGGCAACGATAATCAGAAAGACAATGCATGTGTTGCACATGATAATCAAAGAGCTTGAGCAAGTCGAGAAGTTCATAAATTTGAAGCTGCAGGGGAACCAATTATTGGATCCTAGCCTGCAAAAGACAGTGGGGTTGATCAACATAGATCAGGCTAAGGAGTTTGTGATAAGAATCATCAAATCCACGTGGCGACAATGGTTCTTCTTCACTCCAACCATTGATCACCTTTCACCTTTTCCGCTCCTCTTCTCCTTCGTCGACGGAGTGTCTCATCTCCATCGCCGCTTACACTCTCCCGTTCTTCAACTCCCTCCAATATGGTCGTTACCTTCGGCGCAGTACCCTAAGTTCGTCGTCTTCTTTGATCTAATTGTCCCCTTCCTCGCCTTCTATAGATCCATCCTCGACGATGTCGACGGATGCCATCACCCTGCATACGATGTCGCCGCTGCCTTCACCAACCACCAAGACGCTGTTCGGACTTCTCCTCATCAACCCCAAAATGCAAGAACAGAACAAAACCATCTGAAATTGCAAGAGCGAAAATCCCAAAACCCAAATCAAACCCTAACCCCAAAATGCAATACCCATACGCAAAACCACATGAGAACACAAAATATGATTTTACCCTCTGCGTGCTTGAAGCTTGACGAAGTATTGATTTTTAGGTTAATTTATGTCATAAAATGCAGGTTACGGCTAGGCTTGTTGTGGCTGATCAACACAAATTACAACTTGACTTGGATCTTCAACATTGATGCGGGGTTTTCCTATCTAGCGAGACTTCATTTTGCTGAGTTTAAGGTCCATGAGACAACTTATAAATACAAGGTCAAGGCCACCAGCCAGGTACTTTCTAATTACACTCCATTCAGGGTCTACTCCCATTCAACTCATACTTTCAAATACTCAAATAGTGATAACCATTCACTAAACATTCAATCAAGAGCTGATGCTCTTCAATACACGCCTAACTTGGGCATCAAAGTGCCTTTTGCAGGTACCTCTCCCTCTCTACTGGGTAGATCACCGAACGACCAAGATTGCAGGCGATCGAGCGGCCCAGGCAGAAAGAAGATAATCAGAGAACCCAGTTCAAGCATCGATTTTAACCTTTCACATTTTAATGGGGTGCCTGTGCATAAAGATTTTGTTGTTTTTATTCCCGATGCTATATTGAATGGAGTGGAGATATTCAAAATTAGTGATTCTGTTGGAAATCTGGCAGGGAGGTGTTGTTGGAGGTGTTGGTGTAGTACTTGTGATTGGGCTATTTGCTTTAGCTTCATCTTGTCGTCGGCCATCTGGCTAGCTTCCACTTTCTCTTTATGGTCCTTCACACTATGTAGTTTCTGCCAAGACCAACACAATAGGAAGTTATGCTTCCTCTCTCCCATCAAACCTTTGTCGTCATTTTCATTTGCTGAAATCAAGTCTGTCACAAACAACTTTGATGAGGCTTTGCTTCTTGGTGTAGGAGGATTTGGTAAGGTTTACAAGGGAGAAATTGATGGTGGAACAACCAAAGTAGTAATTAAACGTGGGAATCCACTATCTGAGCAGGGGGTGCACGAGTTCCAAACTGAGATTGAAATGCTCTCTAAACTTCGTCATCGCCACCTTGTTTCTCTGATTGGATACTATTCTAGAGGAAAGAAAGACTCTGATGCGATGGGGGGTTACGATGGTAATGTGAATGACTCCAGAAGCAGTGACATTTCAATGAGCATTGGAGGTAGAAGCTTTTCCTGTTTCGGCGAGGTCGGACTCGAGGTGGTTGAAGAGGTCTTTGTAGGAGGCGTGGAACTCCGGGATAACGTGGGCGCGTTGGGACTTGAGGAGCAAAAGGAGGAGCTGCTTGAGGAGGGCATGTTTGGGTTTGGAGGGGTCGAGGTAGGAGAGGACTCTGTAGCCGCTGGGAATTTTGCAAATCAAGAGCTTGGTGGGCTCGGGAGAGGTGACCGACACTACTGGTGGTGGTTTCTCATAAATGAAGGCTCTAATGAAGGGCACATAATTGGAAGATGGTTGTTTTTCCAATCGCAGGAATAA 2289 0.4421 MLGILREKKLYAKLSKYELWMQKVQVFGHVILTQGILVDPSKVEAMLLGTQAGEEGSVTYALRQLKIHEKNHPTHDLKLATIIRKTMHVLHMIIKELEQVEKFINLKLQGNQLLDPSLQKTVGLINIDQAKEFVIRIIKSTWRQWFFFTPTIDHLSPFPLLFSFVDGVSHLHRRLHSPVLQLPPIWSLPSAQYPKFVVFFDLIVPFLAFYRSILDDVDGCHHPAYDVAAAFTNHQDAVRTSPHQPQNARTEQNHLKLQERKSQNPNQTLTPKCNTHTQNHMRTQNMILPSACLKLDEVLIFRLIYVIKCRLRLGLLWLINTNYNLTWIFNIDAGFSYLARLHFAEFKVHETTYKYKVKATSQVLSNYTPFRVYSHSTHTFKYSNSDNHSLNIQSRADALQYTPNLGIKVPFAGTSPSLLGRSPNDQDCRRSSGPGRKKIIREPSSSIDFNLSHFNGVPVHKDFVVFIPDAILNGVEIFKISDSVGNLAGRCCWRCWCSTCDWAICFSFILSSAIWLASTFSLWSFTLCSFCQDQHNRKLCFLSPIKPLSSFSFAEIKSVTNNFDEALLLGVGGFGKVYKGEIDGGTTKVVIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYYSRGKKDSDAMGGYDGNVNDSRSSDISMSIGGRSFSCFGEVGLEVVEEVFVGGVELRDNVGALGLEEQKEELLEEGMFGFGGVEVGEDSVAAGNFANQELGGLGRGDRHYWWWFLINEGSNEGHIIGRWLFFQSQE 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00805 762 ProSitePatterns Protein kinases ATP-binding region signature. 569 592 IPR017441 GO:0005524
Vimu3g00805 762 PANTHER OS07G0166700 PROTEIN 548 630 IPR045272 GO:0004714|GO:0006468
Vimu3g00805 762 SUPERFAMILY DNA/RNA polymerases 2 95 IPR043502 -
Vimu3g00805 762 FunFam receptor-like protein kinase FERONIA 530 633 - -
Vimu3g00805 762 Pfam Protein tyrosine and serine/threonine kinase 569 630 IPR001245 GO:0004672|GO:0006468
Vimu3g00805 762 Gene3D Phosphorylase Kinase; domain 1 527 634 - -
Vimu3g00805 762 SUPERFAMILY Protein kinase-like (PK-like) 541 631 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00805 Vimu-Chr3 9217947 9224611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00805 551 626 Receptor kinase-like Gene Family AT3G51550 88.158 4.78e-36 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu3g00805 PK_Tyr_Ser-Thr 1.3e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00805 - - atr:18432383 167.162