Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00774 ATGGGAAACACATGTACTGGTCCTAGCATTTCAAAAAATGGTTTGTTTCAATCGGTTTCTGCAGCAATTTGGCGGTCCCAATTGCCTGATGAATCAGTGTCCAATAGAGAATCTGTAAAAGAGGAAGCAACTAGTGTGCCCGAAACGCCTTTGCCTGTCCAAAATAAACCTCCTGAGCAGATAACTATGCCGAAACCTGATGCCAAACAAGAGGCAAAATCAGAAATAGAACCAGCACAAGAACAAGGGAAGAAGAGGCACAAGAAACATGGTTCGGTGAGGAGAGTTTCTAGTGCAGGGCTTCGAGTTGATTCTGTGTTGCAGAGGGAAACTGATAATTTCAAGGAGTTCTTCACTCTTGGAAGAAAACTTGGACAGGGTCAGTTCGGGACAACTTTCTTGTGTGTGGAGAAGGCAACAGGATATGAGTATGCCTGTAAGTCTATTGCAAAGAGGAAGCTTGTCACAGATGATGATGTTGAAGATGTGAGAAGAGAAATTCAGATAATGCACCACTTGGCTGGTCATCCTAATGTTATATCCATCAAAGGTGCATATGAGGATGCTGTAGCTGTTCATGTTGTGATGGAATTGTGTGCAGGTGGAGAGCTTTTTGATAGGATTATACAGCGTGGTCATTATACTGAAAGACAGGCAGCTGAACTTACCAGAACTATAGTTGGGGTTGTGGAAGCTTGCCATTCTCTTGGTGTCATGCACAGAGACCTTAAACCCGAGAATTTTCTCTTTGTCAATCAGCAAGAAGATTCACTTCTAAAAACTATTGACTTTGGATTGTCTGTCTTCTTTAAGCCAGGTACTTTCAGATGGTCTTGCTTATATTGTGATTAA 852 0.4214 MGNTCTGPSISKNGLFQSVSAAIWRSQLPDESVSNRESVKEEATSVPETPLPVQNKPPEQITMPKPDAKQEAKSEIEPAQEQGKKRHKKHGSVRRVSSAGLRVDSVLQRETDNFKEFFTLGRKLGQGQFGTTFLCVEKATGYEYACKSIAKRKLVTDDDVEDVRREIQIMHHLAGHPNVISIKGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERQAAELTRTIVGVVEACHSLGVMHRDLKPENFLFVNQQEDSLLKTIDFGLSVFFKPGTFRWSCLYCD 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00774 283 ProSitePatterns Protein kinases ATP-binding region signature. 124 151 IPR017441 GO:0005524
Vimu3g00774 283 MobiDBLite consensus disorder prediction 27 96 - -
Vimu3g00774 283 Pfam Protein kinase domain 119 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00774 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Vimu3g00774 283 Gene3D Transferase(Phosphotransferase) domain 1 204 279 - -
Vimu3g00774 283 ProSiteProfiles Protein kinase domain profile. 118 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00774 283 Gene3D Phosphorylase Kinase; domain 1 120 203 - -
Vimu3g00774 283 FunFam Calcium-dependent protein kinase 1 120 203 - -
Vimu3g00774 283 PANTHER SERINE/THREONINE-PROTEIN KINASE 108 272 - -
Vimu3g00774 283 SUPERFAMILY Protein kinase-like (PK-like) 117 274 IPR011009 -
Vimu3g00774 283 SMART serkin_6 118 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00774 283 MobiDBLite consensus disorder prediction 66 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00774 Vimu-Chr3 8587289 8588140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00774 1 272 EF-hand Containing Proteins AT5G04870 66.993 4.59e-135 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu3g00774 Pkinase 9.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00774 K13412 - gmx:100819792 499.59