Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00759 ATGGCCTTTGTGAGTGATGGTGTGAGAGCTGGTGGATCTGTTCTAGGTGATCAATTGGATCCAGATGGAGAAAATCGTTGTACGGAAGCTTACTACACCCGAAGCTCTCCTCAGCTTCGTTTTGTTAACGAGCCTCAGCTTCGGAACTTCGTTCATTCAAACTCTTTCATCTTTCACCATAACTCACAGTTGAAAAGCTTGGTCGGAACCATGGCTTCGTTTCCTTCAATCGGATACGACTGTTCACGGTTCGCGGTTTCTGAAACTGAGCGCAATTCTTCGTCGGTGGTGATCATTGGTGCATGCAGTCTCGGATTGGTAATGTACGAGTTTGATCCATCTATTTTGTTGCGTTTTGAGGTCGTTAATTTTGCTTCTGAACGGGGAATCATGGCACAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAGAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCTGTTGCAATTGATGCTCCTGGTGGTTTTCTTTTTGAGTGGTGGTCTGTTTTTTGGGATATTTTTATTGCACGGACAAATGAGAAACATTCAGAGACTGCTGCAGCATATTTGGAGGCACAACAGAATAAAGTGAAAGAGCAACAGCAACTGCAAATTCAGCATATGCAATTAATTCGTCAAGCTCAACTTCAAAGAAGGGATTCTAATCATCCTCCCCTTGGAGGCCCTGTAAATGCTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCAAGTGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTTTAGACGCTAGAATGGCCATCTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAGCTTTGCAGCAAATCCAGGCTCGAACACAGCAAACCCCTGATATCAAAGGTGAAGTCAACATGGGTGCCATGCAGAGATCCTTGCCTATGGACCCTTCATCAATTTATGGGCAGGGAGGAATGCAGTCAAAGCCTGGCATTGCAAACACAGGATTAAATGCTGGAGTAGGTAGTCTCACATTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTACCTCAACCACAACAGCAGCAGCTCCTTGCACAGGTACAGGCACAAGGAAATATTGGCAACTCACCAGTATATGGAGATATGGATCCTCAAAGATTAAGGGGATTAAATCGGGGAAGTTTGAACGCGAAAGACGGTCAATCAATTGCAAATGATGGATCTATAGGCTCTCCAATGCAATCTACTTCCTCTAAGATCAACATGCCACAAATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAACAATTGATTCAGAATAACCGGAAAAGGAAGGGACCTACATCTTCAGGACCTGCAAACAGTACTGGAACAGGAAATACACTTGGTCCTTCTAATTCTCAACCATCAACTCCATCGACTCATACTCCTGGTGATGGAGTTGCAATGACAGGTAACTTGCAGAATGTTGCTGGCGTATCCAAAGGCTTGATGATGTATGGTACTGATGGACCGGGTGGTCTTGCATCTTCCACAAACCAACTGGTAAATCAAATTGATAATTTTATACTTGAGGAGCATGAATCTACTTCACTTGAAGGACGCCCAGTGCACACTTGTCCAATGGGTCTTGTAAAACATGGCAAGGGGGTGAAAAATCATTCTTCGGATCATCAGTGGCCAACCCTGGTTCAGACTAGGCAGGGACAAGGATTAGGGAAACCAGGAATCTTTCATTTCCTGAACACATCAAGAGAAGGGAATCTTTGTTATCCGTGTGTTGGAGCTTTTTGGGAGTTTTTTCTGTTTGAATTAGGGGGAGTGGATGTAATTTTGGGCATGACCTGGGTGCTTTTAGGGGGCGTCAAGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACATTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCGAAAGGCTTTTCCTTCAGTGAAGTTAGTTCTATCCGCAAAAGCAACAGTAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTGGCTAGTGCTGGACATGACAAAAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAGAGTACACCAGAGGAACACAATCTTATTATTACTGATGTACGATTCAGACCGAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACTGTTCGGTTGTGGGATGCTGCTGATCCAACCTTTTCTTTACAGGCATATAGTGGCCATACTTCACACGTGGTGTCCCTTGATTTTCACCCAAAGAAAAATGATCTTTTCTGTTCCTGTGATGATAACAATGAGATCCGTTTCTGGAATATTAACCAATATTCTTGCAGCCGAGTTTTTAAGGGAGGATCTACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCAACTTCTGGCTGCAGCAAGTGGGAGTCTAGTGTCTCTCTTTGATGTTGAGACTGATAGGCAGATGCACATGTTTCAGGGACACTCTGCAGACGTACATTGTGTCTGTTGGGATACAAATGGAGATTACTTGGCATCTGTGAGTCAAGAGTCTGTCAAAGTGTGGTCACTTGCATCTGGGGAGTGCATTCATGAACTTAATTCCAGTGGAAACATGTATCATTCTTGTGTCTTTCACCCAAGCTACTCTACTCTCTTGGTTATTGGAGGATACCAGGTCAGTCTTCTCCACCTGCTAGGAGGGATATCATCTAGGGTGAACCAAAGTCCATTAACTGGATTTGTAGTTTCTACTATGGGAGAGGAAATGACTCCATCATCAGGAGAGTCATATATTGCCTTAGTTTTGGTCTCTAATCCCGTTTCATTGGAGCTATGGAACATGGTTGAGAATAGATGTATGACAATTCCAGCTCATGAGTGTGTGATATCTGCATTAGCACAATCACCCGTCACAGGGATGGTTGCTTCTGCCAGCCATGACAAATCTGTAAAGATTTGGAAATAA 3219 0.4377 MAFVSDGVRAGGSVLGDQLDPDGENRCTEAYYTRSSPQLRFVNEPQLRNFVHSNSFIFHHNSQLKSLVGTMASFPSIGYDCSRFAVSETERNSSSVVIIGACSLGLVMYEFDPSILLRFEVVNFASERGIMAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQNKVKEQQQLQIQHMQLIRQAQLQRRDSNHPPLGGPVNAITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMAILKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPDIKGEVNMGAMQRSLPMDPSSIYGQGGMQSKPGIANTGLNAGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQPQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLNRGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLIQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMTGNLQNVAGVSKGLMMYGTDGPGGLASSTNQLVNQIDNFILEEHESTSLEGRPVHTCPMGLVKHGKGVKNHSSDHQWPTLVQTRQGQGLGKPGIFHFLNTSREGNLCYPCVGAFWEFFLFELGGVDVILGMTWVLLGGVKLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHNLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFSLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRFWNINQYSCSRVFKGGSTQVRFQPRVGQLLAAASGSLVSLFDVETDRQMHMFQGHSADVHCVCWDTNGDYLASVSQESVKVWSLASGECIHELNSSGNMYHSCVFHPSYSTLLVIGGYQVSLLHLLGGISSRVNQSPLTGFVVSTMGEEMTPSSGESYIALVLVSNPVSLELWNMVENRCMTIPAHECVISALAQSPVTGMVASASHDKSVKIWK 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00759 1072 Gene3D - 880 969 IPR015943 GO:0005515
Vimu3g00759 1072 ProSiteProfiles Trp-Asp (WD) repeats profile. 909 949 IPR001680 GO:0005515
Vimu3g00759 1072 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 742 777 - -
Vimu3g00759 1072 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 784 816 - -
Vimu3g00759 1072 CDD WD40 738 1072 - -
Vimu3g00759 1072 ProSiteProfiles Trp-Asp (WD) repeats profile. 742 783 IPR001680 GO:0005515
Vimu3g00759 1072 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 827 862 - -
Vimu3g00759 1072 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1040 1072 - -
Vimu3g00759 1072 PRINTS G protein beta WD-40 repeat signature 761 775 IPR020472 -
Vimu3g00759 1072 PRINTS G protein beta WD-40 repeat signature 1059 1072 IPR020472 -
Vimu3g00759 1072 PRINTS G protein beta WD-40 repeat signature 803 817 IPR020472 -
Vimu3g00759 1072 ProSiteProfiles Trp-Asp (WD) repeats profile. 827 869 IPR001680 GO:0005515
Vimu3g00759 1072 SUPERFAMILY WD40 repeat-like 736 1072 IPR036322 GO:0005515
Vimu3g00759 1072 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 131 1072 IPR044716 GO:0003714
Vimu3g00759 1072 Gene3D - 717 879 IPR015943 GO:0005515
Vimu3g00759 1072 ProSiteProfiles Trp-Asp (WD) repeats profile. 1040 1072 IPR001680 GO:0005515
Vimu3g00759 1072 Pfam LisH 140 166 IPR006594 GO:0005515
Vimu3g00759 1072 Gene3D - 999 1072 IPR015943 GO:0005515
Vimu3g00759 1072 ProSitePatterns Trp-Asp (WD) repeats signature. 761 775 IPR019775 -
Vimu3g00759 1072 SMART Lish 138 170 IPR006594 GO:0005515
Vimu3g00759 1072 MobiDBLite consensus disorder prediction 450 545 - -
Vimu3g00759 1072 ProSiteProfiles LIS1 homology (LisH) motif profile. 138 170 IPR006594 GO:0005515
Vimu3g00759 1072 SMART WD40_4 1033 1072 IPR001680 GO:0005515
Vimu3g00759 1072 SMART WD40_4 902 940 IPR001680 GO:0005515
Vimu3g00759 1072 SMART WD40_4 943 981 IPR001680 GO:0005515
Vimu3g00759 1072 SMART WD40_4 777 816 IPR001680 GO:0005515
Vimu3g00759 1072 SMART WD40_4 863 899 IPR001680 GO:0005515
Vimu3g00759 1072 SMART WD40_4 820 860 IPR001680 GO:0005515
Vimu3g00759 1072 SMART WD40_4 735 774 IPR001680 GO:0005515
Vimu3g00759 1072 ProSiteProfiles Trp-Asp (WD) repeats profile. 784 816 IPR001680 GO:0005515
Vimu3g00759 1072 MobiDBLite consensus disorder prediction 430 545 - -
Vimu3g00759 1072 Pfam WD domain, G-beta repeat 747 774 IPR001680 GO:0005515
Vimu3g00759 1072 Pfam WD domain, G-beta repeat 783 816 IPR001680 GO:0005515
Vimu3g00759 1072 Pfam WD domain, G-beta repeat 1040 1072 IPR001680 GO:0005515
Vimu3g00759 1072 Pfam WD domain, G-beta repeat 905 940 IPR001680 GO:0005515
Vimu3g00759 1072 Pfam WD domain, G-beta repeat 824 860 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00759 Vimu-Chr3 8405291 8437198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00759 736 941 U-box Gene Family AT2G33340 27.315 5.71e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vimu3g00759 WD40 0.019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00759 - - var:108326218 852.432