Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00752 ATGAGAGAAGAAGAATCAAACTGGTTCGAAGACTTACCTTCACCGGAGGAACTCATGCCCTTATCCCAAACCCTAATAAGCCCTCATCTTGCCATTGCTTTTGACATAACCAACTCTTCCCACCACCAATTTCCACTTCAGCCACCTTCCGCCGCCGAGGACGAACCGGCGCGGACACTCAAGCGCCCCAGACTTGTGTGGACCCCACAGCTCCACAAGCGCTTCGTCGATGCCGTCGCCCACTTGGGGATCAAGAACGCCGTTCCCAAGACCATAATGCAGCTCATGAGCGTCGACGGTTTGACCCGGGAAAACGTCGCCAGCCACCTCCAGAAATACCGCCTCTACTTGAAGCGCATGCAGGGTTTGGCCGGAGGTTCCGCCGCCGACTCCGCCACGGACCACCTATTCGCCAGCTCGCCTGTGCCGCCGCACTTCCTGCACCCCGCTGCCCGCCCGGCCTCTGACCATTACCTGCCCTTTGTGCCGGGGTTGCAGCAGCACCGCAATCACCTCCACCACCAGCAGCACATGGCGGTGCCTGCTCATTTTGGCTCGCCGCGGAATGCGCACTTTGAACTCCCCATTCTGTCGAGGATGGGTGCTTCGGTGCCGGGTTACGTGGAGGATGTAGAGTCGGGTGGGAGGAAGGTTCTTACTTTGTTTCCAGCTGGAGATGATTGA 684 0.5863 MREEESNWFEDLPSPEELMPLSQTLISPHLAIAFDITNSSHHQFPLQPPSAAEDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLAGGSAADSATDHLFASSPVPPHFLHPAARPASDHYLPFVPGLQQHRNHLHHQQHMAVPAHFGSPRNAHFELPILSRMGASVPGYVEDVESGGRKVLTLFPAGDD 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00752 227 Pfam Myb-like DNA-binding domain 66 114 IPR001005 -
Vimu3g00752 227 FunFam Two-component response regulator 58 121 - -
Vimu3g00752 227 Gene3D - 59 121 - -
Vimu3g00752 227 NCBIfam myb-like DNA-binding domain, SHAQKYF class 63 115 IPR006447 GO:0003677
Vimu3g00752 227 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 6 177 IPR044841 GO:0003700|GO:0006355
Vimu3g00752 227 SUPERFAMILY Homeodomain-like 59 119 IPR009057 -
Vimu3g00752 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 118 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00752 Vimu-Chr3 8314937 8315620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00752 1 227 G2-like Transcription Factor Family AT5G05090 53.285 8.58e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu3g00752 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00752 - - vra:106771029 454.136