Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00736 ATGACTCTGGGTTGGACTTTGGGAAAGGAAGAAATTGAAAACCCTAGACAACAGCAAAGAGAAGAAGTAAAACCACATGTGAGCCTTGTGCTGGTGGCAATGGCGGAGCACTTGACATCGATGTTCGGGACGGGAATGGTCATGGTGAATTGCCCATTCTACTTTAAGATAGGCGCGTGTAGGCACTATGATTGGTGCTCTTTCCTCCATACGAAGCCGAGCATAAGTCCTACCATTCTGCTCTCCAACATGTACCAGCGCTCCGACATGATAACCTCGGCGGCGATGCCCACGGCAACCCCATCGACCATC 312 0.5064 MTLGWTLGKEEIENPRQQQREEVKPHVSLVLVAMAEHLTSMFGTGMVMVNCPFYFKIGACRHYDWCSFLHTKPSISPTILLSNMYQRSDMITSAAMPTATPSTI 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00736 104 PRINTS U2 auxiliary factor small subunit signature 51 70 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu3g00736 104 PRINTS U2 auxiliary factor small subunit signature 70 90 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu3g00736 104 MobiDBLite consensus disorder prediction 1 20 - -
Vimu3g00736 104 SUPERFAMILY CCCH zinc finger 49 74 IPR036855 GO:0046872
Vimu3g00736 104 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 34 90 IPR009145 GO:0000398|GO:0003723|GO:0089701
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00736 Vimu-Chr3 8158030 8158349 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu3g00736 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00736 K12836 - qsa:O6P43_009515 98.2117