Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00725 ATGGGAATCTGCCATGGAAAACCCATCGAGACCCAGCAGAGTGAGAGAGAAAACCCAGAATTCCCGAGCGAAGTTCCTTCATCAACAAACCCCAAACCCTCGAAATTCCCATTCTACAGCCCGAGCCCTTTGCAGAGTTGGTTTAAAAACTCGCCGGCGAACTCAAACCCTAGCAGCGTGAGTTCCACACCGTTGAGGATCTTCAAGCGCCCCTTCCCACCTCCATCGCCGGCCAAGCACATTCGCGCTCTCCTCGCTCGGCGCCACGGCTCCGTGAAGCCGAACGAAGCCTCCATACCTGAAGGCAGCGAGTGTGAGATTGGGCTGGATAAGAGCTTCGGCTTCGCCAAACAGTTCTCGGCCCATTACGAGCTCGGTGAAGAAGTGGGCCGCGGCCATTTCGGCTACACCTGCTCCGCCAAGCCCAAGAAGGGCCCTCTCAAAGGCATCGACGTTGCCGTCAAAGTCATTCCAAAATCCAAGATGACTACAGCAATTGCCATAGAGGATGTAAGGAGAGAAGTGAAGATATTGCGGGCTCTAACTGGACATAAGAATCTGGTGCAATTCTATGAAGCCTATGAAGATGATGAAAATGTTTTTGTAGTTATGGAGGGTGGAAAGTACCCAGAAAACGATGCCAGAGTAGTTATGATCCAAATATTAAGTGTTGTAGCATTTTGTCATCTGCAGGGTGTTGTTCACCGTGATCTCAAGCCAGAGAATTTTCTTTTCACTTCTAAGGATGATAGTTCCACGTTGAAGGCCATTGATTTTGGATTGTCTGACTATGTGAAGCCAGATGAGAGATTGAATGATATTGTTGGAAGTGCTTATTATGTAGCTCCAGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTCATTGCTTATATTCTTTTATGTGGGAGCCGTCCCTTTTGGGCTCGGACTGAATCTGGTATATTTCGGGCTGTACTTAAGGCAGATCCAAGTTTTGACGAGGCTCCTTGGCCTTCTTTATCTGCTGATGCTAAAGATTTTGTAAAGAGGTTGTTGAACAAGGATTATCGTAAAAGGTTGACTGCAGCTCAGGCACTAAGTCATCCATGGCTGGTGAATCATCATGATGATATGAGGATACCTTTGGATATGATAATCCACAAGCTTGTTAAAGCTTACATTTGCTCATCTTCTTTACGTAAATCTGCTTTACGGGCTCTTGCAAAGACATTAACAGTAGCTCAGCTAGCTTATCTCAGAGATCAATTTACTCTGTTAGGGCCAAACAAGAGTGGATTAATCTCTATGCAGAACTTTAAGACGGCTGTTTTGAGGAGCTCCACAGATGCTTCAAAGGATTCAAGGGTCTTAGATTACGTGAATATGGTTAGTTCTATCCAATATAGGAAACTAGATTTTGAGGAATTTTGTGCTGCCGCTATAAGTATGCACCAACTAGAGGGAATGGAGAGCTGGGAGCAGCATGCAAGGCGAGCCTATGAGCTTTTTGAAAAGGAAGGAAATAGACCAATTATGATTGAGGAACTTGCTTCGGAACTTGGGCTTAGTCCATCAGTACCTGTTCATGTAGTACTTCAAGATTGGATAAGGCACTCAGATGGGAAGCTTAGTTTCTTGGGGTTTGTCAGGCTTCTGCATGGGGTTTCTTCCCGTGCATTTCAGAAGGCTTGA 1692 0.4563 MGICHGKPIETQQSERENPEFPSEVPSSTNPKPSKFPFYSPSPLQSWFKNSPANSNPSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGSECEIGLDKSFGFAKQFSAHYELGEEVGRGHFGYTCSAKPKKGPLKGIDVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDENVFVVMEGGKYPENDARVVMIQILSVVAFCHLQGVVHRDLKPENFLFTSKDDSSTLKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSADAKDFVKRLLNKDYRKRLTAAQALSHPWLVNHHDDMRIPLDMIIHKLVKAYICSSSLRKSALRALAKTLTVAQLAYLRDQFTLLGPNKSGLISMQNFKTAVLRSSTDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISMHQLEGMESWEQHARRAYELFEKEGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRAFQKA 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00725 563 Gene3D - 392 554 - -
Vimu3g00725 563 Gene3D Transferase(Phosphotransferase) domain 1 204 391 - -
Vimu3g00725 563 Pfam Protein kinase domain 123 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00725 563 PANTHER SERINE/THREONINE-PROTEIN KINASE 110 539 - -
Vimu3g00725 563 MobiDBLite consensus disorder prediction 1 38 - -
Vimu3g00725 563 CDD STKc_CAMK 122 370 - -
Vimu3g00725 563 SUPERFAMILY Protein kinase-like (PK-like) 122 397 IPR011009 -
Vimu3g00725 563 ProSitePatterns Protein kinases ATP-binding region signature. 129 155 IPR017441 GO:0005524
Vimu3g00725 563 FunFam CDPK-related kinase 1 116 209 - -
Vimu3g00725 563 SUPERFAMILY EF-hand 400 554 IPR011992 -
Vimu3g00725 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Vimu3g00725 563 FunFam CDPK-related kinase 1 383 555 - -
Vimu3g00725 563 FunFam CDPK-related kinase 1 199 387 - -
Vimu3g00725 563 ProSiteProfiles Protein kinase domain profile. 123 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00725 563 SMART serkin_6 123 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00725 563 Gene3D Phosphorylase Kinase; domain 1 114 203 - -
Vimu3g00725 563 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00725 Vimu-Chr3 8043761 8050194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00725 1 561 EF-hand Containing Proteins AT3G50530 64.501 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu3g00725 Pkinase 7.9e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00725 K13412 - gmx:100796678 1029.24