Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00721 ATGGATAACTCTGACCTCTTTCAGTTCCTTTCAAACAGCAATGGTTCTTTCTTTCCTGAATCTGCATCATCAAGCATGCAACAAAGCTTCTCTGCTTCCTTTTCTTCTTATCCTTTTGAACCATTTCATGCACCACCTCTTCAAGATAAAGCCCTTGCTGCTTTGAGGAACCACAAAGAGGCTGAGAAGAGAAGAAGGGAAAGAATCAATGCCCACCTCAATTACCTTCGCACTCTCCTTCCTTGTAATTCTAAGACCGACAAGGCTTCACTCTTGGCCAAGGTGGTCGAAAGGTTGAAGGAGTTGAAGCAGCATATGTCTGAAATAACCCAATGCGAAACGTTTCCTTCAGAGACCGACGAGGTCTCCGTTCTGTCCACCAGCGTTGACGAGAGTGGCGGTGACGGACGAGTCATATTAAAGGTCTCGTTGTGCTGTGAGGACCGCTCCGACCTCATCCCTGATCTCGTCGAAATTCTCAAGTCTCTGCACCTCACAACACTAAAAGCCGAAATCGCAACGCTGGGCGGAAGGACCCGCAACGTTCTCGTGGTGGCCACCGACAAAGATCACGGCGTTGAATCGATCCACTTCCTGCACAGTTCGTTGAACTCTCTGCTAGAACACAACGGCACATCCAAACGACGCCGTGTCGTGGGACCAAAGTTCATCGCTTAA 678 0.4882 MDNSDLFQFLSNSNGSFFPESASSSMQQSFSASFSSYPFEPFHAPPLQDKALAALRNHKEAEKRRRERINAHLNYLRTLLPCNSKTDKASLLAKVVERLKELKQHMSEITQCETFPSETDEVSVLSTSVDESGGDGRVILKVSLCCEDRSDLIPDLVEILKSLHLTTLKAEIATLGGRTRNVLVVATDKDHGVESIHFLHSSLNSLLEHNGTSKRRRVVGPKFIA 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00721 225 SUPERFAMILY ACT-like 140 212 IPR045865 -
Vimu3g00721 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Vimu3g00721 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 114 IPR036638 GO:0046983
Vimu3g00721 225 PANTHER TRANSCRIPTION FACTOR BHLH30 29 220 IPR045847 GO:0003700|GO:0006355
Vimu3g00721 225 SMART finulus 59 108 IPR011598 GO:0046983
Vimu3g00721 225 CDD bHLH_AtAIG1_like 48 124 - -
Vimu3g00721 225 Gene3D - 48 115 IPR036638 GO:0046983
Vimu3g00721 225 FunFam transcription factor bHLH30 48 111 - -
Vimu3g00721 225 Coils Coil 52 72 - -
Vimu3g00721 225 CDD ACT_UUR-ACR-like 142 191 - -
Vimu3g00721 225 Pfam Helix-loop-helix DNA-binding domain 57 102 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00721 Vimu-Chr3 7994738 7996033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00721 6 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 54.091 4.89e-65 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu3g00721 HLH 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00721 - K22484 pvu:PHAVU_007G243000g 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00721 3 7994738 7996033 Vimu3g00721 3 7994738 7996033 ECH
Vimu6g03204 6 28505093 28506277 Vimu3g00721 3 7994738 7996033 PCT