Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00714 ATGGATATGTATATTCGAGTTAAACGTAGTAAGACAACATACTTCATCCGGTGCAAGGCATCTGATAAAACTATTGACATAAAGCAGAAGTTGCAAGAACTTGTTGATCAACCAACTAATAATCAACGGTTAATTCTACCTGGTAATGGGGAAGTATTAGAAGACTCTAAGACTTTGGCAGATCAAAAGGTAGAGAATGATGCTGTTGTAGCACTGACCTTGAGAAAAGGTAATATGATAATGAGTTTGAGGAGGTCAACATTGTTCGGCCTAACGATTTCTACCAAGCTCGAGATGCAGAGGGTGCCAGTTGGTAAAGCAATGGCTAACTCGCATTACGGTTGGCATGATGAAATCCGTAATGGCTCAGGAAACATTTCCCCAAACGATTGA 393 0.402 MDMYIRVKRSKTTYFIRCKASDKTIDIKQKLQELVDQPTNNQRLILPGNGEVLEDSKTLADQKVENDAVVALTLRKGNMIMSLRRSTLFGLTISTKLEMQRVPVGKAMANSHYGWHDEIRNGSGNISPND 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00714 130 Pfam Ubiquitin family 5 76 IPR000626 GO:0005515
Vimu3g00714 130 SUPERFAMILY Ubiquitin-like 1 84 IPR029071 -
Vimu3g00714 130 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vimu3g00714 130 PANTHER OS03G0364000 PROTEIN 1 78 - -
Vimu3g00714 130 Gene3D - 1 88 - -
Vimu3g00714 130 CDD Ubl_ubiquitin_like 5 72 - -
Vimu3g00714 130 SMART ubq_7 3 75 IPR000626 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00714 1 75 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 32.000 8.08e-06 41.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00714 K03873 - gmx:100499885 138.272