Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00709 ATGAAGAACTCTGGTTTGGAAAGTGGAATGTTCATTGACAGTGATGAAGATGTGGAGAATGATCAGCATAAATATTTGAATGATGGAAACGATTCGGATTGTTCGAATTACTCCAATGAAAACCAGTCAATGAGGAAACCCAGCAACTTCAACATGGCATGGCCTCAAAGTTACAGGCAATCCATTGATCTATATGGTAGTGTACCATCACCAAATATTGGATTCCTGGGGACCACATCCCTGTCAAGATTAGGAAGTTCTTTTATTTCTTCATCTTTGACAAGGAGGCAAACTCTTGAAATATTACAACCAGAGAAAAAACCACTCTTGCAACCCACAGAAGAGGAGCAACTGCGACATACCTTGCTTCCTTCACAGCTATCTAGAAAGTCTTCCATTAGGAAAGATCCTTCCAAGGTTTCTCATGAAGTTCACATACCTGGCCAATGCACTTTTGGACAAGCTGTGCTTAATGGCATAAATGCCCTTTGTGGAATAGGAATCCTTTCAACCCCTTATGCTGTTAAAGAAGGTGGATGGGTTGGTCTTTCTATATTGTTATTGTATGCACTTTTTTCCTTTTACACTGGTTTGCTTCTGCGTTACTGCTTGGATAGTTCACCTGGTCTTGAGACATACCCTGACATTGGCCAAGCAGCTTTTGGTACTATTGGACGTGTCATCATATCTGCTTGTTGCATTGAGTACATAATTGTGGAGAGTGACAACTTATCGACATTATTTCCAAATGCACACGTTAGTTTGGGAGGAATTGAAGTTAATGCACACATATTGTTTGCAATATTGACAGCTTTGGCTCTTCTTCCTACTGTTTGGCTTCGTGATCTACGCATTCTCAGTTACATCTCAGACAAAGCTGCCATTGATCATAGCCAAGGAACAACAACCTTGAATCTCGCAACTTTTCCTGTTGCAATGGGTCTCTATGGTTACTGCTACGCAGGACATGCTGTGTTTCCAAATCTCTACACTGCCATGGCAAATCGGAATCAATTTCCTGGAGTGCTCTTAGTATGTTTTGCTATTTGTACAAGTCTGTATTGTGCTGTAGCTGTTGTTGGTTACTCAGCATTTGGAGAAGGAATACATTCTCAGTTCACTCTTGACATGCCCCAACACTTAGTAGCTGCCAAGATAGCTGTGTGGACTACGTCATTGATTCTTCCTGCTGCTTGTTTTCTAAGCATAAGGGGTGGCAGAATCTCAAGCTTTCAGGTAGCACTTTGTGTTACAATTATTATTGTAGGTGTTGTATCAAGCTGTTTTGGATCATACTCATCCCTCGCTGAGATCATTGAGCAATTGTTTGGATAA 1335 0.4105 MKNSGLESGMFIDSDEDVENDQHKYLNDGNDSDCSNYSNENQSMRKPSNFNMAWPQSYRQSIDLYGSVPSPNIGFLGTTSLSRLGSSFISSSLTRRQTLEILQPEKKPLLQPTEEEQLRHTLLPSQLSRKSSIRKDPSKVSHEVHIPGQCTFGQAVLNGINALCGIGILSTPYAVKEGGWVGLSILLLYALFSFYTGLLLRYCLDSSPGLETYPDIGQAAFGTIGRVIISACCIEYIIVESDNLSTLFPNAHVSLGGIEVNAHILFAILTALALLPTVWLRDLRILSYISDKAAIDHSQGTTTLNLATFPVAMGLYGYCYAGHAVFPNLYTAMANRNQFPGVLLVCFAICTSLYCAVAVVGYSAFGEGIHSQFTLDMPQHLVAAKIAVWTTSLILPAACFLSIRGGRISSFQVALCVTIIIVGVVSSCFGSYSSLAEIIEQLFG 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00709 444 Pfam Transmembrane amino acid transporter protein 150 290 IPR013057 -
Vimu3g00709 444 Pfam Transmembrane amino acid transporter protein 301 387 IPR013057 -
Vimu3g00709 444 PANTHER OS05G0424000 PROTEIN-RELATED 158 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00709 Vimu-Chr3 7851068 7859861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00709 7 391 Amino Acid or Auxin Permease AAAP Family AT2G39130 56.604 6.77e-162 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00709 K15015 - gmx:100798108 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00709 3 7851068 7859861 Vimu3g00709 3 7851068 7859861 ECH