Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00703 ATGAAAGAAATAGAGGTGGAGTGTGAGTTTTTGAAGAGGAGCTGCGAAAATCTGACGGATGAGAATGGAAGGTTGCAGAAAGAAGTGCAAGAGCTTAGTGTGGAAGGAGGTCCCTGCTGCATAGAATATCCCCTCAAGACTCATGTTACAATCCATAGAGAAGCGGAAGAAAAGAGGGCCTTTATTGAGGCCAAAAAAGGGGAAGATTTCTTGAAGGTAGAAGAGATATTTGCAAAGTACAGGGCAACTGGAACAGATATTTTGAAGCCACATTTCCTCTGGGATAATGTATTCGAGCCTTTTCCATACAAAGAAAGATACTCCCGATTTCTCAAAATTTGTCTCTCTTCTCCTAACCATTATGCACTGGTAGAATGGGTTGACTGGGTAAAGTCTCGCTTTCGAGGTCTTCTTCTGCATGGGGAGTTCATGAAGATTATAAAGAATGGCTATGAAGGTTCTCCTGGGAGGATAGAGATGTTCATCCTGTTAGCTTCTCAGCTGCCAAATTGA 513 0.425 MKEIEVECEFLKRSCENLTDENGRLQKEVQELSVEGGPCCIEYPLKTHVTIHREAEEKRAFIEAKKGEDFLKVEEIFAKYRATGTDILKPHFLWDNVFEPFPYKERYSRFLKICLSSPNHYALVEWVDWVKSRFRGLLLHGEFMKIIKNGYEGSPGRIEMFILLASQLPN 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00703 170 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 101 146 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vimu3g00703 170 PANTHER OS02G0117200 PROTEIN 50 85 - -
Vimu3g00703 170 SMART halz 2 44 IPR003106 GO:0006355|GO:0043565
Vimu3g00703 170 Pfam Homeobox associated leucine zipper 2 33 IPR003106 GO:0006355|GO:0043565
Vimu3g00703 170 Coils Coil 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00703 Vimu-Chr3 7771151 7773795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00703 1 32 Homeobox Transcription Factor Family AT3G60390 75.000 1.35e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00703 K14376 - vra:106774848 103.219