Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00701 ATGACAACAGCAGAAGAAACTTCAAACTTGGATCTCATACGCCAACATCTCTTAGGTGAAAACATCTCAACCTCCTTTTTCTCCAATTTCTCCAATCTCAACCCTGTCAAGCTTGAAGCCCCTTCATCACCACAGTTTGATTTCAGCTCGTATATCTCAGACAACACCAGCTTCTTTACTTTCCTTCAAGGCTATGACTTGGTGGCAGACATGGAATTTGTTGATCACAAGCCCATCATGAACTCCACATCAACATCAACAACACCAACCATCTCCACCCCCTTAAAGAAATGCAATTCTCCTGAACCATTGGCATCATCAGAATCAGAAGAGAAGGCAAAGAAAGCAGAATACGATGAAGCAAAACGTTATAGAGGAGTTAGGAGAAGGCCCTGGGGTAAGTTTGCTGCTGAAATCCGTGACCCTACAAGGAAAGGTACAAGGGTTTGGCTTGGCACTTTTGACACTGAAATTGATGCTGCTAAGGCCTATGATTGTGCTGCTTTCAAGATGAGAGGTCAGAAGGCCATTCTGAACTTCCCTCTTGAGGCTGGAGAGTCTGATCCAAAACCAAACACTTGTGGCAGGAAAAGAAGAAGAGAGAGCCTTGAATCGGAGCTGCCACAGGTCCATCTTCATCATGGTGTCTCATGA 654 0.4465 MTTAEETSNLDLIRQHLLGENISTSFFSNFSNLNPVKLEAPSSPQFDFSSYISDNTSFFTFLQGYDLVADMEFVDHKPIMNSTSTSTTPTISTPLKKCNSPEPLASSESEEKAKKAEYDEAKRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDTEIDAAKAYDCAAFKMRGQKAILNFPLEAGESDPKPNTCGRKRRRESLESELPQVHLHHGVS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00701 217 FunFam Ethylene-responsive transcription factor 2 122 183 - -
Vimu3g00701 217 SUPERFAMILY DNA-binding domain 123 182 IPR016177 GO:0003677
Vimu3g00701 217 Gene3D AP2/ERF domain 122 183 IPR036955 GO:0003700|GO:0006355
Vimu3g00701 217 MobiDBLite consensus disorder prediction 83 117 - -
Vimu3g00701 217 PRINTS Ethylene responsive element binding protein signature 163 183 IPR001471 GO:0003700|GO:0006355
Vimu3g00701 217 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Vimu3g00701 217 CDD AP2 122 181 IPR001471 GO:0003700|GO:0006355
Vimu3g00701 217 MobiDBLite consensus disorder prediction 182 217 - -
Vimu3g00701 217 Pfam AP2 domain 123 173 IPR001471 GO:0003700|GO:0006355
Vimu3g00701 217 PANTHER DNA-BINDING DOMAIN 90 191 IPR044808 GO:0003700|GO:0009873
Vimu3g00701 217 SMART rav1_2 123 187 IPR001471 GO:0003700|GO:0006355
Vimu3g00701 217 MobiDBLite consensus disorder prediction 83 106 - -
Vimu3g00701 217 ProSiteProfiles AP2/ERF domain profile. 123 181 IPR001471 GO:0003700|GO:0006355
Vimu3g00701 217 MobiDBLite consensus disorder prediction 190 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00701 Vimu-Chr3 7733333 7733986 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00701 1 207 AP2-EREBP Transcription Factor Family AT5G07580 40.455 2.70e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g00701 AP2 6.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00701 - - ccaj:109813158 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00701 3 7733333 7733986 Vimu3g00701 3 7733333 7733986 ECH
Vimu6g02777 6 24354080 24359707 Vimu3g00701 3 7733333 7733986 PCT