Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00700 ATGCCTCAAGTCATATCTTCCTCCAAGCCTCCAAGATCCTCAAATCTAAGCAACCGCAAACCCTCTTTGAAAAACATCACAATCCCTTCTATAACTTCAGGTCTTGTGATTCCACACCACATGGAAACAACATCATCAACAACATTAGGTACAACCTCGTATGACAGCAGCAATCAAGTTTCTTCTTCTTTGGATGATGTTAACAATAGCAGAGAGGATAAGCACTACAGAGGGGTCAGGAGAAGGCCGTGGGGGAAGTTTGCTGCAGAAATTCGAGACCCTAATAGAAAAGGCTCAAGGGTATGGCTTGGAACCTTTGACACAGCCATAGAAGCTGCTAAGGCTTATGACAAAGCTGCTTTCAGGATGAGAGGGAGCAAAGCCATATTGAACTTCCCTTTGGAGGTTGGAGAATCTGAAGAAGAATCAGTTTCGATGAAGGTTGGTTTGAAGAGAGAAAGAGAGGAAGAAAGTGAAGGGAAGAAGGAAAGTAACAAGCTTGTGAAGAAAGAAGAGTGCTCTCCCAAAGGGGTGTGCCCTTTGACTCCATCATGTTGGAAAGGCTTTTGGGACACTGATGTTATGGGAACCATCTTTAGTGTTCCTCCTTTGTCACCATTATCTCCACTGATGGTTGTTTGA 642 0.4393 MPQVISSSKPPRSSNLSNRKPSLKNITIPSITSGLVIPHHMETTSSTTLGTTSYDSSNQVSSSLDDVNNSREDKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDKAAFRMRGSKAILNFPLEVGESEEESVSMKVGLKREREEESEGKKESNKLVKKEECSPKGVCPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMVV 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00700 213 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
Vimu3g00700 213 SUPERFAMILY DNA-binding domain 75 135 IPR016177 GO:0003677
Vimu3g00700 213 MobiDBLite consensus disorder prediction 37 70 - -
Vimu3g00700 213 PANTHER DNA-BINDING DOMAIN 45 163 IPR044808 GO:0003700|GO:0009873
Vimu3g00700 213 CDD AP2 74 133 IPR001471 GO:0003700|GO:0006355
Vimu3g00700 213 FunFam Ethylene-responsive transcription factor 2 74 135 - -
Vimu3g00700 213 Gene3D AP2/ERF domain 74 135 IPR036955 GO:0003700|GO:0006355
Vimu3g00700 213 MobiDBLite consensus disorder prediction 147 166 - -
Vimu3g00700 213 MobiDBLite consensus disorder prediction 37 66 - -
Vimu3g00700 213 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Vimu3g00700 213 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Vimu3g00700 213 PRINTS Ethylene responsive element binding protein signature 115 135 IPR001471 GO:0003700|GO:0006355
Vimu3g00700 213 MobiDBLite consensus disorder prediction 1 25 - -
Vimu3g00700 213 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00700 Vimu-Chr3 7697580 7698221 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00700 13 210 AP2-EREBP Transcription Factor Family AT5G51190 48.309 2.02e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g00700 AP2 5.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00700 K09286 - gmx:100795866 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00700 3 7697580 7698221 Vimu3g00700 3 7697580 7698221 ECH
Vimu6g02730 6 23846400 23846753 Vimu3g00700 3 7697580 7698221 PCT