Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00697 TTGAACATTTCCAAATTAGTCGTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTACACACTTCGTTCTGCAACATTTTCAAATCTCCTTCACTTTTGAACATTTCCAAATTAATTTCGCTCTTCTTCTTCTTCTTCTCCTTCTCTCTACACACTTCGAATTCAAGAATGGGCGTTGAGAACTACCACGTGATTGAACTCGTAGGCGAGGGTTCCTTCGGGAAGGTATACAAGGGAAGGCGCAAGCACACGGGGCAGACCGTTGCGATGAAGTTCATAATGAAGCATGGGAAAACTGAGAAGGATATTCACAATTTAAGGCAGGAAATCGAGTGTCAAGAGTATTTGGGTTTGGAACAGACATGTCGCCTCAGAGGGCATAAGATCTTAAGAAAGTTGAAGCATGAAAATATTATTCAAATGCTTGATTCCTTTGAAAGCCCGCAAGAATTTTGTGTCGTTACAGAATTTGCACAAGGTGAGCTATTTGAGATTCTTGAGGATGATAAGTGCCTTCCGGAAGGCCAAGTTCAAGCAATTGCAAAGCAATTGCTTTGTGATTTTGGGTTTGCACGTGCAATGTCTACAAATACAGTTGTTTTGCGATCTATAAAAGGCACTCCGTTGTATATGGCTCCGGAGCTTGTACGTGAACAACCTTACAACCACACTGTAGATTTATGGTCTCTTGGCGTCATACTGTATGTTGGGTCTCTCTATTTATCTTCATCTAGTAATGGACTTTTTATTGTGACTGTGCTTTCTGACCCTCATTTTTCTTTACCAGTCATGAGTCACCTTGTTCATGTTTACAACAGGTATGAGTTATTTGTTGGCCAACCACCATTTTACACAAATTCTGTATATGCTCTCATCAGACACATTGTTAAGGATCCTGTTAAATATCCTGATCGCATGAGTCCAAATTTCAAAAGCTTTTTAAAGGGTTTGCTTAACAAGGCACCGGAAAGTCGTCTAACTTGGCCGGCTCTTCTTGAGCACCCATTTGTTAAAGAAACCTCTGATGAACATGAGGCCAGGGAATTGCGAGAGATAAATGGTTCACGCATGCGCAGTGAAGCAGAACGGATGGTTGAAGGGAAAATCATTCAAACTCCAACAGGTATGGAGGGGCATATTGCTTCACCGCTTCAGAGTGAAGCTCAGTTAAATGGTCATAACATAGACAGAACTAACTCTTCAGTGCTTGATGATTCTCCGGGATTTTCAAATCAAAATATCGTAGAGTCAGGCTGCCAAAGATTGGACAGACTTGAAAATAACTCTCGCACAGTCAAAAATGCAAAACTAATTGGTCAAGATAATGAAGCGTTGGGACATATTCTGCTACCACTGCAAAAATGGTCAAAAGGATCTCAAAATATTTGCAGTGATCAAGATGTTCCTCAATCAAATCAGTCATTGAGGATTCTCTCAAACCTAGTTGCAGCTGGTGCCTTCAATTCTAGTGGACGAATAGATGAACTAATAAGAGAGCTTCTTGTGTTTACTGGATCCGTTATAGCCATCAAGTCTTCTGAAGTTACTGACATGATAGCAAAGGGTTTCTCTATCACTAAGATTTTGCTAGATAATGGCAAAAGTTGCTCTTCAAGATCTTATCTAAATCACTGGGTTGAATTTGTTGAGATCTATTCTCAGGTTGTAGCATCAAATAATGATGCCTCTGGAAGAGTTCTCTATGAATCCAGTGCTTGCATTACAGTCATGGTGTCTGGAGTTGCTCAGGTGCTCATGTCATCTCAAATTTCTGGCCAAGAGACATCGAATGAAACAGCTAACAGAATTTTAGACCATGCAAAAACGATGGGTCTAGTGGACCATCTATGTCTGTGTTTAGCCACATCTGGATCAAGTCTTATTTCAGGTTCTTCCAACATGCTAAGGGCTGCTTCTGAAGCATGCAGAGCTATCTGGTCTTTGATTAATGCACTGGATATTCTTTTTATGAAAAAATGTGCCATTTTGTTTCCCATTAATGCGTTGCGCAGTCATTCTTTGCATAGGATGGAAGTTTTGCAACATGAGCAAAATCTCTTTGACAAAGCAGATTCAACAAAAATTGTTGATGCAATGACAAGAGCATTTCTTAGATCTAAAGCTGTCCAGGTTGCTGTTTACTATTGCTTTCACCAACGACTTGAGTCTGCAATGAATTGTTGTCTTCAGCTTTTGTCAAGGTGCTGCCTACATAATGAAATTGTTCCAGCTGTCCTTTGTGGTCTTCCCAGTTCCCTTCCGGTGACTACTGTTGTTAGTGGTGGTGGTGATGGAACTATTGTTTCAGAAGTTTTCACTGTTTTATCATTATGCAGTTCCTCTGTTAACAAAGACACACAGAGTATAGAACCAAGTAATGTAAAGTTCAAATTAACAAATCCTTCTGCTCTGGTTCGTCATTCATGTCTTGTTCTCGCAATAATTGCTCAGTGTTTGAAGTCAACGGGAAGAAATTCAGCAATGTTTATGCTCACTACCGCACCAAAAAAGCAGCTTGCTCGACTTTCAGTGCTTTCACATCATATTACTCATGATGATAAAATAAAAGCCTCCATCGAACCTCAAAGTGCATCAGCCATGTTGGCTTTGGCATCCATTCTGTCTCTCGAATCTGGGGCTTTAGTTGAGTCTCCAATATCTGAAATTGCAATACCTTTAATTCCTCGAACCTCTACACTAAGTGATCATCTTAAATTTTCATGTGGCAATAAAAATGAATTGGACCCTTGCAACTTCAGTGGGAAACTCTCTTATTGGCAAGGGGTAAGAGATGGGTATGTTGGTCTTTTAGATTCCAGAATCAAGTGGGGAGGACCATTGGCTGTTCAGCAGTTGTGTGCAAGTGGCATTCCTCTACTTCTTATGGGCTTATTAGGCAGTGATGTTTTAGACGCATCTCATGGAACCGACCATCAAAATGATAGAGTTGGATTGTCTCCAATTGGTGTTGTATGGACAATTTCATTATTATGTCATTGTCTTTCTGGAGGTGCTATGGTATATCGTCAAATTTTGATTAGGAATGAACATATTAAGCTCATTTCTAACTTGATATGTGATGTTCATATCAAGTTAGTGAAATGCTGGATCGGACCTGGTGGAGGGAAAGCAGGAGTCAGAGATCTAATAAATGCTGTGATAGATATCTTAGCATTTCCTTTTGTTGCTCTTCAAAATGCACCTGGCTTGCCTTCAGCCACTGCTTCTGTCAGCAGTGGCTTTCTTCTTAATATGGGCTCCCCTGGTCAGAGAGTATGCATGGAAGATAAGGGTATAGTTAAGGCAATTGAAGAAGACATGGGAAAATATATTAAGATACTTGTAGAGGTTGGTGTGCCTGGTATTATCCTTCGGTGTGTAGATCATATGGATTTGAATGATTTGGGCAGGCCTGTCGCATTTCTGGCCAAGATGGTCTGTCACCGACCTTTGGCAATCCAACTCGTGAGTAAAGGTCTTTTGGATCCAAATAGGATGAGAAAGTTGTTTGACTGTTCGGGCCCAAAAGAGGTCACACTGGATGCTCTTATGATTATTTCTGATCTGGCTCGCATGGACAAGGTATTCTATGAGTACATTAAAGGTGCTAATATTTTGGAGTTCTTGAAAGATTTTCTTTCGCACGAGGATCCCAATGTGCGTGCCAAAGCCTGCAGTGCTCTTGGGAACATGTGTCGTCATAGCGCCTATTTTTATAGTTCACTTGCTAGACATCAAATTGTTGGTATCCTTATCGAAAGATGTTCTGATCCAGACAAACGAACACGAAAGTTTGCTTGTTTTGCTATTGGAAATGCGGCTTACCACAATGACTTGTTGTATGAGGAGCTGAGGAGATCGATTCCTCATCTAGCAAATTTGTTACAAATGGCTGAGGAAGATAAGACTAAGGCAAATGCAGCAGGAGCACTTAGCAATCTGGTTCGCAACTCTGACAAACTTTGTGAAGACATCGTATCTAAAGGAGCGGTTCAGTCTCTGCTGAAATTAATTTCCGATTGTGCGGTATCAGCCCTAAATCCAGGTAGAAATGATTCAGGAAACGAATCTCCGCTTAAGATCGCTCTGTTTTCCCTGGCAAAGATGTGTGCACATCCACTCTGTAGACAATTCATCCGTTCATCACCTTTGTTCCCTGTGATTGGAAGGCTTCAGCAGTCTCCAGAATCATCCATAGCCAAATATGCCTCCGTCATCATTGGTAAAGTTGCTGATCCTTGA 4239 0.4088 MNISKLVVFFFFFFFFSLHTSFCNIFKSPSLLNISKLISLFFFFFSFSLHTSNSRMGVENYHVIELVGEGSFGKVYKGRRKHTGQTVAMKFIMKHGKTEKDIHNLRQEIECQEYLGLEQTCRLRGHKILRKLKHENIIQMLDSFESPQEFCVVTEFAQGELFEILEDDKCLPEGQVQAIAKQLLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHTVDLWSLGVILYVGSLYLSSSSNGLFIVTVLSDPHFSLPVMSHLVHVYNRYELFVGQPPFYTNSVYALIRHIVKDPVKYPDRMSPNFKSFLKGLLNKAPESRLTWPALLEHPFVKETSDEHEARELREINGSRMRSEAERMVEGKIIQTPTGMEGHIASPLQSEAQLNGHNIDRTNSSVLDDSPGFSNQNIVESGCQRLDRLENNSRTVKNAKLIGQDNEALGHILLPLQKWSKGSQNICSDQDVPQSNQSLRILSNLVAAGAFNSSGRIDELIRELLVFTGSVIAIKSSEVTDMIAKGFSITKILLDNGKSCSSRSYLNHWVEFVEIYSQVVASNNDASGRVLYESSACITVMVSGVAQVLMSSQISGQETSNETANRILDHAKTMGLVDHLCLCLATSGSSLISGSSNMLRAASEACRAIWSLINALDILFMKKCAILFPINALRSHSLHRMEVLQHEQNLFDKADSTKIVDAMTRAFLRSKAVQVAVYYCFHQRLESAMNCCLQLLSRCCLHNEIVPAVLCGLPSSLPVTTVVSGGGDGTIVSEVFTVLSLCSSSVNKDTQSIEPSNVKFKLTNPSALVRHSCLVLAIIAQCLKSTGRNSAMFMLTTAPKKQLARLSVLSHHITHDDKIKASIEPQSASAMLALASILSLESGALVESPISEIAIPLIPRTSTLSDHLKFSCGNKNELDPCNFSGKLSYWQGVRDGYVGLLDSRIKWGGPLAVQQLCASGIPLLLMGLLGSDVLDASHGTDHQNDRVGLSPIGVVWTISLLCHCLSGGAMVYRQILIRNEHIKLISNLICDVHIKLVKCWIGPGGGKAGVRDLINAVIDILAFPFVALQNAPGLPSATASVSSGFLLNMGSPGQRVCMEDKGIVKAIEEDMGKYIKILVEVGVPGIILRCVDHMDLNDLGRPVAFLAKMVCHRPLAIQLVSKGLLDPNRMRKLFDCSGPKEVTLDALMIISDLARMDKVFYEYIKGANILEFLKDFLSHEDPNVRAKACSALGNMCRHSAYFYSSLARHQIVGILIERCSDPDKRTRKFACFAIGNAAYHNDLLYEELRRSIPHLANLLQMAEEDKTKANAAGALSNLVRNSDKLCEDIVSKGAVQSLLKLISDCAVSALNPGRNDSGNESPLKIALFSLAKMCAHPLCRQFIRSSPLFPVIGRLQQSPESSIAKYASVIIGKVADP 1412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00697 1412 Coils Coil 1280 1300 - -
Vimu3g00697 1412 SMART arm_5 1276 1315 IPR000225 GO:0005515
Vimu3g00697 1412 SMART arm_5 1192 1232 IPR000225 GO:0005515
Vimu3g00697 1412 SMART arm_5 599 649 IPR000225 GO:0005515
Vimu3g00697 1412 SMART arm_5 1316 1370 IPR000225 GO:0005515
Vimu3g00697 1412 FunFam Serine/threonine-protein kinase TIO 1139 1408 - -
Vimu3g00697 1412 SUPERFAMILY ARM repeat 1105 1409 IPR016024 -
Vimu3g00697 1412 Gene3D - 1138 1408 IPR011989 -
Vimu3g00697 1412 Pfam HEAT repeats 1206 1310 - -
Vimu3g00697 1412 Gene3D Transferase(Phosphotransferase) domain 1 185 240 - -
Vimu3g00697 1412 Gene3D Transferase(Phosphotransferase) domain 1 272 389 - -
Vimu3g00697 1412 Gene3D Transferase(Phosphotransferase) domain 1 52 184 - -
Vimu3g00697 1412 PANTHER PROTEIN KINASE RELATED 58 234 - -
Vimu3g00697 1412 SUPERFAMILY Protein kinase-like (PK-like) 63 340 IPR011009 -
Vimu3g00697 1412 CDD STKc_STK36 59 336 - -
Vimu3g00697 1412 Pfam Protein kinase domain 61 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00697 1412 ProSiteProfiles Protein kinase domain profile. 61 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00697 1412 ProSitePatterns Protein kinases ATP-binding region signature. 67 94 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00697 Vimu-Chr3 7619308 7631574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00697 56 325 AGC Kinase Gene Family AT3G08720 27.815 4.76e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_Fused Vimu3g00697 Pkinase 3.2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00697 K06228 - gmx:100792102 2231.45