Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00689 ATGAATGCTTCAAAGTCCTTAGTGAAAAGGCACGAAGGTTGCTCCCGTAGCCCTTCCTCTGGCAAAGAATTGAGTGAAGTGTTTGTGAAACGCAGGAAGGTAAATCAAGCATTGGTGACATTCAGGAACTTGGTTGACAAGCTAATGCATCAGTACAAATTGTACGAACCTGAGAATCCTAGGGCTAAGAATAAAGCGCTGATGGAAGCAGCAATGACAATGAGAAGAGAACATCAATGGGAGAACACTCAAAAGTGCGTGGGACATATACTAGGAATAGATGTGGGTGATATTTTTCAGTACTGGGTTGAACTCAATGTCATTGGCCTCCATAGGCAGTTTTGGCATGGAATTGATTATAAGATAATGGACAACAGCTTGTTTGCCACAAGCATTGTCGTAACAGACCGCTATGATAATACTAGAAGATCCAATGGTACCTTGGTTTATGAAGGTGAAGGAGGAAATCCTGCCGTTGGGAAAAATGTTTCACTTCGTGATCAAAAACTGGAAGGAGGAAATTTGGGGCTTAAAAATAGCATGCAAGCTAGAAGTCCAGTGAGAGTTATATTCAAAGTTTGTGGAAAGTTTGATAGTACATTCAGTTACAGTAACAGTAATTCTCATTACTCATATGTTTATGATGGTTTGTATTTGGTGGATACAATGAACATGGAAAGAGGGAGATATGGAAAGCTTGTGTTCAAGTTTGGATTGAATAGAATTTTAGGACAACCTGAAACTTGTGTTTCCCTTAAGGACCATGGTGAAAATTCAAGGCAACTTGCAAATTTTGGTCCTAGGAAGAAACTCAAGCCGACAGTCTGTGTTGCCGAAAAGGAGGTTGTTCGAGTTAAAGATCTTTCAAATGGTCGGGAGAAATTTACCATTAGGGTGGTGGCTCCAATTGATTATGTTCAGCTACCCACATCCTTTGATTATATTGTAAGTAACATTTACTCAAAGAAGTTCGAACAGGCAATTCTTTGTGGCTGTGATTGTGCTGATGGGTGTGTTGACAAAGAAAATTGTGTCTGCTTCAGGAAGAAAAAGTGTAGCAAAATGCCGAATGGTTCTAATAAAAGACTTGCTTCTGAGATGGAATCATCACTTATTTATGAGTGTGGCCCATCTTGCAAGTGCTCCTCTTCTTGCATCAACCGAGTAACTCAGAATGGTATTCGGTTTCAGCTAGAAATCTTCAGGACAGAACATAAAGGTTGGGGTGTTAGAACACGCTCTTTCATTCCCTCTGGAAGCTTTGTATGTGAGTTTATTGGAGAAGTCAATGACTATATGGAGGCTAGATGGAGGCTAGATAATGGCTATATATTTCACATGGGTGTTGGAAAGGTCTTCATCAATGCAAGCAAATGTGGAAACGTTGGAAGATTCATAAATCATAGCTGTGCTCCAAATCTCCGTATCAAAGATGTTATGTATGATCGCAGTGACAAGAATCTTCCTCACAAAATGCTGTTTGCTTTAAAGGACATTCCTGCTGGTAGAGAGCTGACTTATGACTATAATTCCTTGAATGGAAAATTTATCAAGTGTAGGAATAATAGCTGCTGCTGTGGAACACCGGAATGCAATGGACAGATCTACATTTAA 1614 0.3984 MNASKSLVKRHEGCSRSPSSGKELSEVFVKRRKVNQALVTFRNLVDKLMHQYKLYEPENPRAKNKALMEAAMTMRREHQWENTQKCVGHILGIDVGDIFQYWVELNVIGLHRQFWHGIDYKIMDNSLFATSIVVTDRYDNTRRSNGTLVYEGEGGNPAVGKNVSLRDQKLEGGNLGLKNSMQARSPVRVIFKVCGKFDSTFSYSNSNSHYSYVYDGLYLVDTMNMERGRYGKLVFKFGLNRILGQPETCVSLKDHGENSRQLANFGPRKKLKPTVCVAEKEVVRVKDLSNGREKFTIRVVAPIDYVQLPTSFDYIVSNIYSKKFEQAILCGCDCADGCVDKENCVCFRKKKCSKMPNGSNKRLASEMESSLIYECGPSCKCSSSCINRVTQNGIRFQLEIFRTEHKGWGVRTRSFIPSGSFVCEFIGEVNDYMEARWRLDNGYIFHMGVGKVFINASKCGNVGRFINHSCAPNLRIKDVMYDRSDKNLPHKMLFALKDIPAGRELTYDYNSLNGKFIKCRNNSCCCGTPECNGQIYI 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00689 537 ProSiteProfiles Post-SET domain profile. 520 536 IPR003616 -
Vimu3g00689 537 Pfam SAD/SRA domain 87 245 IPR003105 -
Vimu3g00689 537 ProSiteProfiles SET domain profile. 396 510 IPR001214 GO:0005515
Vimu3g00689 537 SMART preset_2 285 380 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu3g00689 537 Pfam SET domain 407 510 IPR001214 GO:0005515
Vimu3g00689 537 ProSiteProfiles YDG domain profile. 88 241 IPR003105 -
Vimu3g00689 537 Gene3D SET domain 265 520 IPR046341 -
Vimu3g00689 537 MobiDBLite consensus disorder prediction 1 21 - -
Vimu3g00689 537 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 28 528 - -
Vimu3g00689 537 Gene3D - 69 264 IPR036987 -
Vimu3g00689 537 ProSiteProfiles Pre-SET domain profile. 330 393 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu3g00689 537 SMART G9a_1 83 245 IPR003105 -
Vimu3g00689 537 SUPERFAMILY SET domain 275 518 IPR046341 -
Vimu3g00689 537 Pfam Pre-SET motif 289 388 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu3g00689 537 SMART set_7 396 516 IPR001214 GO:0005515
Vimu3g00689 537 SUPERFAMILY PUA domain-like 70 252 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00689 Vimu-Chr3 7544860 7547786 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00689 66 535 Su(var)3-9 homologs AT1G73100 33.333 1.84e-73 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu3g00689 SAD_SRA 1e-36 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00689 - - vun:114192587 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00689 3 7544860 7547786 Vimu3g00689 3 7544860 7547786 ECH
Vimu6g02675 6 23375542 23383179 Vimu3g00689 3 7544860 7547786 PCT