Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00680 ATGGCTATGTTTGATCTCAATGTTGACATCAACCATGCTGATGCAGATTCTGGCTCGAGCTGTGCTCAAAAGGAGGTGAAACTGCAGAGTTTTCCGACTGATATCTCAGATTCCAGAACCTCCAACTCCTCTGTGTGGAATCCTGCAGATGAAGATTCCTCAAACAATTCCTCTCCCCTGATTTTTGACATATTGAAGAAAGAGAGGGGTGGCTCAGAGTTAAACATGGAGCAAAACATGGCACAGAAGGGAGAGATGGCGACAAGGACCTTTTTCCCTGTGACTTCTTCTGATAAAGGAGGAAGAGTGCCTGATTTCACATCTGGGTTGTGGGGGAATACTCAATTGTTGAACCAGTCCTTTCCTGAATCTGATGAAAAACAGAATGAACTGAGAACCTTACAGCAGAAGCTACCACATGTGAGGAAAAACAGGAGAGGACCAAGGTCTCGCAGTTCTCAATACCGAGGTGTCACCTTCTACCGCAGGACTGGTAGATGGGAGTCACATATATGGGATTGTGGGAAGCAGGTTTATCTGGGTGGATTTGACACTGCTCAAGCTGCTGCAAGAGCGTACGATAGGGCTGCTATTAAGTTTCGTGGAGTAGATGCTGATATAAACTTTAGTCTGAGAGATTATGAGGAGGACTTGAAGCAGATGAGAGGTTTGAGTAAGGAAGAGTTTGTGCTTGTTCTTCGTCGACAAATCAATGGAATCTCGAGGAGAAACGCAACTTACAAAAGTGCATTAGCTCTTCACAAAGCTGGTCAAGGAGAGCCAAGTATGGGACCATTTCTTAGCAAGACATTTTATCCCAAGTCTGAAGGAAAAGTGGAGAGCAGTTTTAGAGCTTTTTCCTATAAGGAAAAAATAATTGGAAATTCCAGTATAGCAGGAACTTGCCATGATCTTGATTTGAGCCTGGGGATTTCTACATGTTCTAAAAAGTTGAAGAATTCTGATTATGGTGGAGAGTATTCCTTTGGATGTATACCCCAGGAAATAGGAACAATGTGTGAGGAGAAGAGCATGGTGGAGAGAATGAGAAGTGTTAATCTGCAAAAGTTTTGCAGCAATGGCAGCATTGGCTCAAGGCCATTGCAATCAAATGCAGCATCATCAGGATTCGTCACATATCAATTGTGCCAACACAACTCATCATTAACTCTCCATGGTTGTGGTGTCACACTCGTAGATCAAATCAAACCACTCTAA 1218 0.4327 MAMFDLNVDINHADADSGSSCAQKEVKLQSFPTDISDSRTSNSSVWNPADEDSSNNSSPLIFDILKKERGGSELNMEQNMAQKGEMATRTFFPVTSSDKGGRVPDFTSGLWGNTQLLNQSFPESDEKQNELRTLQQKLPHVRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAARAYDRAAIKFRGVDADINFSLRDYEEDLKQMRGLSKEEFVLVLRRQINGISRRNATYKSALALHKAGQGEPSMGPFLSKTFYPKSEGKVESSFRAFSYKEKIIGNSSIAGTCHDLDLSLGISTCSKKLKNSDYGGEYSFGCIPQEIGTMCEEKSMVERMRSVNLQKFCSNGSIGSRPLQSNAASSGFVTYQLCQHNSSLTLHGCGVTLVDQIKPL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00680 405 ProSiteProfiles AP2/ERF domain profile. 154 210 IPR001471 GO:0003700|GO:0006355
Vimu3g00680 405 Pfam AP2 domain 154 202 IPR001471 GO:0003700|GO:0006355
Vimu3g00680 405 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 88 272 - -
Vimu3g00680 405 SMART rav1_2 154 216 IPR001471 GO:0003700|GO:0006355
Vimu3g00680 405 MobiDBLite consensus disorder prediction 32 59 - -
Vimu3g00680 405 Gene3D AP2/ERF domain 153 212 IPR036955 GO:0003700|GO:0006355
Vimu3g00680 405 Coils Coil 124 144 - -
Vimu3g00680 405 CDD AP2 153 209 IPR001471 GO:0003700|GO:0006355
Vimu3g00680 405 SUPERFAMILY DNA-binding domain 153 211 IPR016177 GO:0003677
Vimu3g00680 405 FunFam AP2-like ethylene-responsive transcription factor 153 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00680 Vimu-Chr3 7395399 7399355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00680 3 269 AP2-EREBP Transcription Factor Family AT2G28550 50.909 3.93e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g00680 AP2 2.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00680 K09284 - gmx:100776138 533.487