Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00619 ATGGCGGTCGTTTCTTCTTCTTCTTCTACTTCCATGTGGCTCTTCTTTTTTCTCCTTCTGGCGCTGTTCATTCACCTACAAGCAGCAATGGCCACCACCACTCCGCAGATCTCTCACCTCAGGAATGTTGAAGTGAAAAAACACAGGTTGCCGAGCTTGCAGAACTCGTCAATGGCGGAGAGCCATTGGATCGAGCAAACGATCACAGCCGTTGAAAAATCGTTGATGCTTCGATCTGGATCGTTTATTCGTTTGTTTGCTTATTTATTGTTTAAGATTGTGACTGTGCTTGTAACTGTTTCTATCAGGGCACTGGAGGCTGAAAAATTAAATGAACAAGCTGCAGTGGCTAACCCAGAGGAAGTGGTTTCAATGGTTGAGATGTGGGTCTCTATTTCTTTCTCTCTCTCTTCATTTTCACTGACACAGACCAACCCTGTTACAATGAGCATCCAGAATAGTACACAGAGAAGGAATCTGGGGTTTTTCTCTTGTGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGTGACCCCAACTGGCAGCGCAACAGGAAGCGTCTTGCAGATTGTGGCATTGGATTCGGCAGAAATGCCATTGGTGGTCGTGATGGAAAGTTCTATGTTGTGACTGACCCCAGGGATGATGACCCTGTGAACCCCAAACCTGGCACTCTTCGTCATGCTGTGATCCAGGACAGGCCCTTGTGGATTGTGTTCAAGAGGGACATGGTTATTCAGTTGAAGCAAGAGCTAATCATGAACAGCTTCAAGACCATTGATGGAAGAGGAGCCAATGTGCACATTGCTAATGGGGCATGTATCACAATTCAGTTTGTTACCAATGTCATCATCCATGGCCTGCATATTCATGATTGCGTACCTACCGGAAATGCCATGGTGAGGAGCTCCCCCACCCACTTTGGGTGGAGGACAATGGCTGATGGAGATGCCATCTCCATATTTAGCTCAAGCCACATTTGGGTTGACCACAACTCCTTGTCCCACTGTGCTGATGGCCTTGTGGATGCTGTCTTGGGCTCAACAGCCATTACTATTTCAAACAACCACTTCACTCACCACAATGAGGTGATTCTGCTGGGCCACAGTGACTCTTACACAAGAGACAAGCTCATGCAAGTGACCATCGCATACAACCATTTCGGAGAGGGACTTATCCAGAGAATGCCACGGTGTAGACATGGATATTTTCACGTGGTGAACAATGACTATACTCACTGGGAAATGTATGCCATTGGTGGAAGTGCTAACCCCACCATTAACAGCCAGGGAAACCGATACAATGCTCCTGTTAACCCTTTTGCAAAGGAGGTGACTAAGAGAGTGGAAACAGCAGAAAGTCAGTGGAAGGGTTGGAATTGGAGGTCTGAGGGAGATTTGTTGCTGAATGGTGCCTTTTTCACACCATCAGGAGCCGGAGCCTCAGCCAGCTATGCCAGGGCCTCAAGCTTAGGTGCCAAATCTTCTTCCATGGTTGGTTCCATGACTTCCAATGCCGGTGCACTAGGTTGCAAAAGAGGCCGTCAGTGCTAG 1554 0.4768 MAVVSSSSSTSMWLFFFLLLALFIHLQAAMATTTPQISHLRNVEVKKHRLPSLQNSSMAESHWIEQTITAVEKSLMLRSGSFIRLFAYLLFKIVTVLVTVSIRALEAEKLNEQAAVANPEEVVSMVEMWVSISFSLSSFSLTQTNPVTMSIQNSTQRRNLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGACITIQFVTNVIIHGLHIHDCVPTGNAMVRSSPTHFGWRTMADGDAISIFSSSHIWVDHNSLSHCADGLVDAVLGSTAITISNNHFTHHNEVILLGHSDSYTRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPVNPFAKEVTKRVETAESQWKGWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGSMTSNAGALGCKRGRQC 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00619 517 SMART amb_all 243 440 IPR002022 -
Vimu3g00619 517 FunFam Pectate lyase 168 510 - -
Vimu3g00619 517 PANTHER PECTATE LYASE 18-RELATED 142 515 IPR045032 GO:0030570
Vimu3g00619 517 PRINTS Pollen allergen Amb family signature 191 208 IPR018082 -
Vimu3g00619 517 PRINTS Pollen allergen Amb family signature 215 240 IPR018082 -
Vimu3g00619 517 PRINTS Pollen allergen Amb family signature 417 436 IPR018082 -
Vimu3g00619 517 PRINTS Pollen allergen Amb family signature 395 414 IPR018082 -
Vimu3g00619 517 PRINTS Pollen allergen Amb family signature 315 336 IPR018082 -
Vimu3g00619 517 PRINTS Pollen allergen Amb family signature 459 483 IPR018082 -
Vimu3g00619 517 PRINTS Pollen allergen Amb family signature 488 511 IPR018082 -
Vimu3g00619 517 PRINTS Pollen allergen Amb family signature 251 267 IPR018082 -
Vimu3g00619 517 Pfam Pectate lyase 250 432 IPR002022 -
Vimu3g00619 517 Gene3D - 168 510 IPR012334 -
Vimu3g00619 517 SUPERFAMILY Pectin lyase-like 139 511 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00619 Vimu-Chr3 6547590 6552222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00619 99 517 Polysaccharide Lyase AT4G13710 79.048 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00619 K01728 - gmx:100781845 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00619 3 6547590 6552222 Vimu3g00619 3 6547590 6552222 ECH