Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00614 ATGGCAGAAGATATGAAAATTGATCAAATTGTGGAAATTCCTGATACCCCAGATAGAATAATTGTGAGGGGTGATGATCAGAAACGTTTATGTAATCCTGAGAAGAGGAGCAGAGCTTTTAATGCTGCAGTTGAAATGAATAATAATTTGTGTACTACATTGTCCCCGTCAGAGAAATCTTATACTTCTCAAAATGCTCCCATCTTTAGGAGAGGCCAAACAATGCATTCTAGTGGAGCTGAAAAGATGGAGAAAGGGAAAAGTATATACTCCAAGGTTTCTTCTAAATCATCTCACCGTGATATTTCTGTTTTAGATTTGACTGAAGAGAATGGACCGAGCCAACAACTGAAACCAGCTTTCTCACTTGGTGCATCAAGAGATCATGCAACTGAAGACAAGAAAGCACCCAAAGCAACTATTGGGAACTCTTTGTTGCCAGCCATTTCAGGTTCTTCTGTTACATCTAGAAATCCCTTCACTGGAAAGTGTAAACTTCCAGGTTCTAATACATCTGTGGATCGTGGCAAGGGTATTTCTCTGTCTCAGGATTCTCAATCCCAAAATGATAAGCAAGTGTCTTTGCCTCCATTTGTTTCCAGCTCTCCACGAGGTAGAGGGAACAAGAGATTGGTTCGAAATGGGTGTATTTTACCTGATAATATTGCTGCAAGGGCTAAACAATTAGCTGAACAGAGACACCTTCAGAATGAAGATGTTGAACAGAGCCATGCTGATCATGCGCTTTCTAGCAATGCAGTGTCACCAAATAGTGTTCATGACATAGTTGCTAGAGAGAGAGGCAATGGTAAAGTTAAAGGAAAGGAAGTTCTTATTTCTCCTCCATTCAATGGACGCAGTGCTGGAACTTTTTGCACTGCTAACAGCCCTGTCATCAATCATGAAGAGGTCACTGTTACCAATAATGATACAAGAAATTCACTTCAATACCCTGGAGGACAAGGTGGTTGGAGAACTACTCGTAATGACCGGAATGCTAATCAGCACATGTGTGATGTACATGGGCATCGCATGACGAGAAATAATGGTGTTGGAAGATTTATTAATAGGCGGGATACACACATAGTGGATGGAAGAAACATTGGGAGTGGTCAAAGCAGCACACATGTACAACATAGTCTTCAATCAGATCATATAGCTCAACCAAGTTCTGTGATCATGCCAGATGTGGGCCAGTCAGCTGTTAACCGTCCTACTGCTGACATTCTGGCTAAAAGGCAAAGGAGACGTGAATCACCTGGGGAGTCATCAAGTTCACGTCCGGAAGTGGTAGAGTTGTTATCCACACCAAGGAACTCAGCAAGCTCATCCCGGAGCCGTGGCTTGGATCCTGAAGTGGTTGAGTTGGTATCCACACCAAGGCACAAATCATCTGAAGATTTAGATGATAACAACAACAATAGCTTGGAAGCTCGAGCAAGACAAGTGGAAGCGGATGAGATTTTGGCACGTGAACTCCAAGAACAATTGTATCATGATGATTTTATAGAAAACAGAGGGATTGATGAACATTTAGCGTGGGAGTTGCAGCATGCAGAGGATCTTCTGCCTACATCCATTGATAGTCACAGCATAAATCATCATGCACGGCTTCCTAGGGCAAACAGACAGCCTCGTATACCTAATCAGAATTCTTCAAGAAGGAGAGCTATGCCTGTAGTTTCTTTCTCTAATAGAATGTCACAGTTGAGGAGTCGTGCCACAAGTAGGACTCGGACACCTAACATGTCATCTAGAGGAAGAGGCCCCCGGTTTCCTCTGGATATGGACTTAGACATGGCAGCAGCGTCTGTCACTGAGGTGGCGGAACAGGTCTGCAACTATATTCATTTAAGGCTAGGTCTGGGTCAGGTTGCATTGACCTTTGACTTCTTCCACCTCTCGAAAGGGGTCACAAATCTGACAATATTCTCTGGACATTCTTGCATCCTGAAATGTGATTTCCACTATGTCTGTTCTGTGACGTGCAAAGTGGCCATGATGTCAAACCAGCATTGCCACTTCTATGTGAGACTTGATATATTGGAAGCTTTAGAAAATTCAATGGGGGATTTCAGTGATATGGGAATGGCTGATGGCATCTTTAATGGGCGACGTGATTTCAATGAAAGTGATTATGAAATGTTATTGGCCCTTGACGAGAGAAATCACCAACATACTGGTGCGTCTACTAATCTGATAAATAGCCTTCCACAGTCCACCATCCAGCCCTTCATGATCTGCTGGTCCAATTTCAGTTCTGGGACAGCAGAAAATAGGAATGACAACATGACAGAGCCATGTGCTATATGTCTTGAGACCCCAGCCAAGGGAGAAACTATTCGCCACCTTCCCTGTTTGCACAAATTTCATAAAGATTGTATCGATCCTTGGCTCCAGAGAAAAACAACATGCCCCGTCTGCAAGTCATCAATCACCTAA 2442 0.4316 MAEDMKIDQIVEIPDTPDRIIVRGDDQKRLCNPEKRSRAFNAAVEMNNNLCTTLSPSEKSYTSQNAPIFRRGQTMHSSGAEKMEKGKSIYSKVSSKSSHRDISVLDLTEENGPSQQLKPAFSLGASRDHATEDKKAPKATIGNSLLPAISGSSVTSRNPFTGKCKLPGSNTSVDRGKGISLSQDSQSQNDKQVSLPPFVSSSPRGRGNKRLVRNGCILPDNIAARAKQLAEQRHLQNEDVEQSHADHALSSNAVSPNSVHDIVARERGNGKVKGKEVLISPPFNGRSAGTFCTANSPVINHEEVTVTNNDTRNSLQYPGGQGGWRTTRNDRNANQHMCDVHGHRMTRNNGVGRFINRRDTHIVDGRNIGSGQSSTHVQHSLQSDHIAQPSSVIMPDVGQSAVNRPTADILAKRQRRRESPGESSSSRPEVVELLSTPRNSASSSRSRGLDPEVVELVSTPRHKSSEDLDDNNNNSLEARARQVEADEILARELQEQLYHDDFIENRGIDEHLAWELQHAEDLLPTSIDSHSINHHARLPRANRQPRIPNQNSSRRRAMPVVSFSNRMSQLRSRATSRTRTPNMSSRGRGPRFPLDMDLDMAAASVTEVAEQVCNYIHLRLGLGQVALTFDFFHLSKGVTNLTIFSGHSCILKCDFHYVCSVTCKVAMMSNQHCHFYVRLDILEALENSMGDFSDMGMADGIFNGRRDFNESDYEMLLALDERNHQHTGASTNLINSLPQSTIQPFMICWSNFSSGTAENRNDNMTEPCAICLETPAKGETIRHLPCLHKFHKDCIDPWLQRKTTCPVCKSSIT 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00614 813 SUPERFAMILY RING/U-box 767 812 - -
Vimu3g00614 813 Pfam Ring finger domain 768 809 IPR001841 -
Vimu3g00614 813 SMART ring_2 768 808 IPR001841 -
Vimu3g00614 813 MobiDBLite consensus disorder prediction 57 95 - -
Vimu3g00614 813 ProSiteProfiles Zinc finger RING-type profile. 768 809 IPR001841 -
Vimu3g00614 813 MobiDBLite consensus disorder prediction 366 383 - -
Vimu3g00614 813 MobiDBLite consensus disorder prediction 57 72 - -
Vimu3g00614 813 MobiDBLite consensus disorder prediction 424 447 - -
Vimu3g00614 813 MobiDBLite consensus disorder prediction 363 383 - -
Vimu3g00614 813 MobiDBLite consensus disorder prediction 408 453 - -
Vimu3g00614 813 MobiDBLite consensus disorder prediction 108 211 - -
Vimu3g00614 813 MobiDBLite consensus disorder prediction 409 423 - -
Vimu3g00614 813 MobiDBLite consensus disorder prediction 145 201 - -
Vimu3g00614 813 PANTHER SI:CH211-59O9.10 346 813 - -
Vimu3g00614 813 SMART ringv_2 767 809 IPR011016 GO:0008270
Vimu3g00614 813 MobiDBLite consensus disorder prediction 310 329 - -
Vimu3g00614 813 CDD RING-H2_PA-TM-RING 767 809 - -
Vimu3g00614 813 FunFam RING/U-box superfamily protein 716 813 - -
Vimu3g00614 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 717 813 IPR013083 -
Vimu3g00614 813 MobiDBLite consensus disorder prediction 229 259 - -
Vimu3g00614 813 MobiDBLite consensus disorder prediction 569 585 - -
Vimu3g00614 813 MobiDBLite consensus disorder prediction 231 245 - -
Vimu3g00614 813 MobiDBLite consensus disorder prediction 569 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00614 Vimu-Chr3 6434596 6443409 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00614 678 813 C3H Transcription Factor Family AT1G04790 55.882 2.42e-41 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00614 - - gmx:100796218 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00614 3 6434596 6443409 Vimu3g00614 3 6434596 6443409 ECH