Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00599 ATGGCTATGGAACTTGTCGCTGGACCATTAATGGGAGCTATTTTCAACGTGTTGCTTGACAGGATAGCTTCCACTGAGGTTGTCAACTTCTTCAAGAACAAAAACTGTGAGAAGTTGCTCAAAAGGTTGAAAATCATCTTGCTATCAGTCAATGTTGTTCTCAATGATGCTGAGGAAAAGCAAATGAAAAATGGGGCGGTGAAGGAGTGGCTTGAGGAACTCAAAGATGTGGCCTTTGCTGCTGAGGACCTACTTGATGAGATCTACACTGATGCAAAGATCAAGGCAAAACAGGTGAACACTCTCCACTCTGGTCATATGAGTTTTTATGGTAAAGGGGTTGAAGAGAAAATTGAAGATGTTCATGAGAGATTAGAGTTTATCATGAGACAGAAAGAAGTGCTTGATCTAAAAGTGGGTAAGGAAGTCAAAATGGCACACAAGACTCCAACCTCATCTGTAATGGAAGCATGTGATGTGTTCGGAAGAGATAATGATAAAGAATTCTTGGTTGACTTGGTGTTGACTCATGATGAGAAAATAGGTGTTATTCCCATTGTTGGAATGGGAGGAATTGGAAAAACCACCTTAGCTCAACTGATATACAATGATCAAAGAGTGCAGAAGGAATTTGATCTCAAAGCCTGGATTTATGTCTCTGAGGAATTTGACATTTGTAAGATTACAAAAACCCTTTTGGAGGCTGTCACGTCTTGTAGTTGTGACGTTGAGGATTTAAATTTTCTGCAGAGGGATCTCAAAATGCATGTAATGAAGAAAAAGTTTTTGTTTGTGTTGGATGACGTGTGGAATGAAAATTATGACAATTGGGACAAGTTCAGGAGTCCATTTAAGCATGCAGGGGAACATGGAAGTAAGATTATTGTAACTACTCGAAGTGGGTGTGTTGCATCCATCATGCAAACTGTTTCACCCTATAATCTCAGAGAGTTGTCCAATGAAGATTCCTGGAATTTATTTTCAAAACATGCATTTGATTATGGTGATTCACGTTTGCAATTGCATCAAAGTTTAGACAAAGTTGGGAGAGAAATAGTGAGGAAGTGCAAAGGTTTGCCTTTGGCTGTGAAGACACTTGCAGGACTTTTGAGGTGTAAAAGTGATAGACAAGAATGGTGTAAAGTATTGGACAGTGAGATGTGGGATTTGCAAGATTCTGAGAGTAACATTCTTCCGGCTTTAAGATTAAGCTACCATTATCTCCCATCACATTTGAAGAGATGTTTTGCTTATTGTGCAATTTTCCCAAAAGATTATGAATTTGAGAAGGAGAACCTGGTTTTGTTGTGGATGGCAGAGGGTTTTCTCCAACAATCCAAAAGACATAGAAGAATTGAAGAAGTTGGCAATGAGTACTTCTGTGAACTGGTATCTAGATCATTTTTCCAGCAATCAAGGCGTGGCAAGTCATGTTTTCTAATGCATCACCTTGTAAATGATTTGGCTCAGTTTGTCTCAGGAACATTTTCTATCAGAATGGAATGTAGCAATTCTAATGAAATCAAAGAAAGAACTCGCCATTTGTCACACATTATTGCAGATAGTTCCTCATACGTAAATCTGAAAGATGTTAGCAAAGCAAATTGCTTACGCACTTTTCTGCAAATAAGACCAGTAGGTACATCCATTGATTTGTTCAACAACATGCCAAATGATCTGTTAACAAAGTTAAGGTGCTTAAGGGTGTTATCTTTGGTAGGTACACATATCTATAGCTTACCTAATTCAGTAGGTGAACTAAAGCATCTCCGCTATCTGGAAGTGGCTGATACTGAGATTGTGAGGTTACCTGAATCCATCTGCAACTTGTTCAGTTTACAAACTCTCAAGCTAGTTGGATGTCACAATCTTATTGAACTGCCAGCAAGTATTCATAAGCTTGTTAACTTGCGCCATTTGGATATTAGGGGAACAAGTTTAAGGTGGATGCCATTGCAAATCAATGAGTTAAACAGCCTCCAAAATTTGAGTGACTTTTTTGTGGGAAAGGGGTGTGGATCTTCCCTCGGTGAATTGGGTGAGTTATCATGCTTACATGGAGAATTGTTCATTCATTTCCTAGAACACATTGTTAGTGACAAGGATTGTGAAAAGGCAAAGTTGAAGGAAAAGCATGGTCTTGAAAAGTTGTCTTTGGACTGGTGTGGGAATGGTGAAACTGAGAACTCTCAGAAAGAAAAAACCATACTGAACAGCCTGCAACCACATACAAATTTGAAGAAGCTGGATATCTATGACTATCCAGGAACAGAATTTCCAGAGTGGTTGGGGGATCAATCCTTCTACAATCTGGTGTCCTTAATGCTTAATGGCTGTAAATATTGCTACAAGCTACCTCCCCTTGGACAAGTTCCAATGTTGAAAGAGCTCCAGATCAGTAGATTTGAGGGACTAGTGAGTGTGGGATCTGAGTTTCTTGGAAATAGAACCTCTTATGTGAGTGATTACTTTCCTGCACTAGAAATTCTAAGGATTGAGTCTATGCCATTATGGGAGAAATGGTATCCTAATGCTGAAAATGCAGGAAGTAAAGCTTTCTTTCATCTTAGAGAGTTTCATATTGGAAACTGTCCCAAACTGAGGGGGGATTTACCAGATAACCTTCCATCTTTGACATTACTTGTAATCAGAGATTGTAAACGTCTACTTTGTTCACTTCCTAATTCTCCATCTCTGCGCGTGTTGAACATTCAGAATTGTCAGAGTCTAGAATTCAAAGTACACTCACCTCTGGGCCACCAATCACTGACATCATTGTTCTTGCATGGTAGTTGTGACTCACTCGTGTTCTTGCCTTTAGATCTCTTCCCCAATATCAAGTCTTTGGATATATGGGGATGTAAAAATCTTGAAGCACTTACTATTTCAGAATCAGATGCAGCCCGTCCAAATTTGAAGTCCCTCCATTCCTTGCGCGTAAGGCACTGTCCAAATTTCACATCATTTCCCAAGGGTGGATTTGCAGCATCAAAACTCACTTTGTTAACAATCAACTACTGTCAGAAGTTGAATTCTCTGCCTGAACAAATGCATGACCTTATGCCAAGTTTGAAGGAAGTTCAACTGAGGGGATGTCCCAAAATTGAGTCATCAAGTATGAGGCCACTAAGGATCAGGATTTGCAGCAAACACGTGGAAGGCAAACAAAACCTCTCTGATCCTCTCTTTGCAAGGTTGAAAGGTTTGGCCACTGATCAAAGCCCCTCATCAAGTTAG 3237 0.397 MAMELVAGPLMGAIFNVLLDRIASTEVVNFFKNKNCEKLLKRLKIILLSVNVVLNDAEEKQMKNGAVKEWLEELKDVAFAAEDLLDEIYTDAKIKAKQVNTLHSGHMSFYGKGVEEKIEDVHERLEFIMRQKEVLDLKVGKEVKMAHKTPTSSVMEACDVFGRDNDKEFLVDLVLTHDEKIGVIPIVGMGGIGKTTLAQLIYNDQRVQKEFDLKAWIYVSEEFDICKITKTLLEAVTSCSCDVEDLNFLQRDLKMHVMKKKFLFVLDDVWNENYDNWDKFRSPFKHAGEHGSKIIVTTRSGCVASIMQTVSPYNLRELSNEDSWNLFSKHAFDYGDSRLQLHQSLDKVGREIVRKCKGLPLAVKTLAGLLRCKSDRQEWCKVLDSEMWDLQDSESNILPALRLSYHYLPSHLKRCFAYCAIFPKDYEFEKENLVLLWMAEGFLQQSKRHRRIEEVGNEYFCELVSRSFFQQSRRGKSCFLMHHLVNDLAQFVSGTFSIRMECSNSNEIKERTRHLSHIIADSSSYVNLKDVSKANCLRTFLQIRPVGTSIDLFNNMPNDLLTKLRCLRVLSLVGTHIYSLPNSVGELKHLRYLEVADTEIVRLPESICNLFSLQTLKLVGCHNLIELPASIHKLVNLRHLDIRGTSLRWMPLQINELNSLQNLSDFFVGKGCGSSLGELGELSCLHGELFIHFLEHIVSDKDCEKAKLKEKHGLEKLSLDWCGNGETENSQKEKTILNSLQPHTNLKKLDIYDYPGTEFPEWLGDQSFYNLVSLMLNGCKYCYKLPPLGQVPMLKELQISRFEGLVSVGSEFLGNRTSYVSDYFPALEILRIESMPLWEKWYPNAENAGSKAFFHLREFHIGNCPKLRGDLPDNLPSLTLLVIRDCKRLLCSLPNSPSLRVLNIQNCQSLEFKVHSPLGHQSLTSLFLHGSCDSLVFLPLDLFPNIKSLDIWGCKNLEALTISESDAARPNLKSLHSLRVRHCPNFTSFPKGGFAASKLTLLTINYCQKLNSLPEQMHDLMPSLKEVQLRGCPKIESSSMRPLRIRICSKHVEGKQNLSDPLFARLKGLATDQSPSSS 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00599 1078 Gene3D Ribonuclease Inhibitor 527 889 IPR032675 -
Vimu3g00599 1078 Gene3D - 404 491 IPR036388 -
Vimu3g00599 1078 SUPERFAMILY L domain-like 547 957 - -
Vimu3g00599 1078 Gene3D - 141 311 IPR027417 -
Vimu3g00599 1078 FunFam Probable disease resistance protein At1g63360 405 491 - -
Vimu3g00599 1078 FunFam Probable disease resistance protein At1g61300 143 312 - -
Vimu3g00599 1078 Pfam Rx N-terminal domain 11 93 IPR041118 -
Vimu3g00599 1078 Gene3D Ribonuclease Inhibitor 892 1057 IPR032675 -
Vimu3g00599 1078 Gene3D - 317 403 IPR042197 -
Vimu3g00599 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 419 IPR027417 -
Vimu3g00599 1078 Gene3D - 15 127 - -
Vimu3g00599 1078 PANTHER DISEASE RESISTANCE PROTEIN RP 61 832 IPR044974 GO:0006952
Vimu3g00599 1078 SUPERFAMILY L domain-like 938 1051 - -
Vimu3g00599 1078 Pfam NB-ARC domain 175 405 IPR002182 GO:0043531
Vimu3g00599 1078 PRINTS Disease resistance protein signature 894 910 - -
Vimu3g00599 1078 PRINTS Disease resistance protein signature 183 198 - -
Vimu3g00599 1078 PRINTS Disease resistance protein signature 256 270 - -
Vimu3g00599 1078 PRINTS Disease resistance protein signature 356 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00599 Vimu-Chr3 6260947 6264183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00599 181 651 WRKY Transcription Factor Family AT5G45050 23.366 1.70e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00599 - - vum:124831962 2075.44