Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00589 ATGGTGGCAGTGCGAACTAGGAAGAAGATGATGGTGAAGGCGTGCGATGAAGATGCTTTTCGTGTGGACAGTGGATCGAACAAAGAATACTTTGCGATATTGATTGAATATGAGGGTGGTGATGGTGATCTTGGGAAAGTTGAACTGAAGGAAGGAGTAGATTCAAGTCCATGGTATTCCATGGAAAGATCATGGGGTGCAGTTTGGAAACTTGACAAAGGCTCTCCACTCACTGCACCATTCTCTATCAGACTAACCTCTCTTAAATCTCACAACACCATTGTTGCCAACAATGTCATTCCTAAGGGCTGGACTTTTCAGACATATAGATCAATTGTCAACTTTTGA 348 0.4282 MVAVRTRKKMMVKACDEDAFRVDSGSNKEYFAILIEYEGGDGDLGKVELKEGVDSSPWYSMERSWGAVWKLDKGSPLTAPFSIRLTSLKSHNTIVANNVIPKGWTFQTYRSIVNF 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00589 115 Gene3D - 17 115 IPR036749 -
Vimu3g00589 115 PANTHER EXPANSIN-B3 19 115 - -
Vimu3g00589 115 PRINTS Major pollen allergen Lol pI signature 20 35 IPR005795 GO:0005576|GO:0019953
Vimu3g00589 115 PRINTS Major pollen allergen Lol pI signature 36 51 IPR005795 GO:0005576|GO:0019953
Vimu3g00589 115 PRINTS Major pollen allergen Lol pI signature 67 84 IPR005795 GO:0005576|GO:0019953
Vimu3g00589 115 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 29 112 IPR007117 -
Vimu3g00589 115 SUPERFAMILY PHL pollen allergen 19 108 IPR036749 -
Vimu3g00589 115 Pfam Expansin C-terminal domain 19 101 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00589 Vimu-Chr3 6126920 6130681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00589 20 115 Expansin Gene Family AT1G65680 56.701 4.74e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00589 - - gmx:100777550 155.606