Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00588 ATGTCTTGTACGCTTAAACATGCATTTTCTCATTCACTCACTCTTCTAGCTTCCTTTTCAATACTCCTAGTGGTCCCTTCTTCTTGTTTCAACCCCAAAAAGATTGTTAATGCTTCAATTGATTCATACTCTTCAGATGGTTCATGGTCATCTGGTGTGGCTACTTGGTATGGACCTTCCAATGGGGATGGAAGTGAAGGTGGTGCTTGTGGTTATGGCAGAAGTGTTGGGGAACCTCCATTCTCATCAATGATAGCTGCAGGAAGCGCTCCTTTGTTTGATTCAGGCAAAGGTTGCGGTTCTTGTTACGAGGTGAAGTGCACAGGGAATAAAGCATGCTCAGGCAACCCTGTAAGGGTAGTCATCACTGATCACTGTCCTGATTGTGGTTCTGACGCACATTTTGATATGAGTGGCGCTGCTTTTGGTGAAATGGCAGTTTCAGTGATGGTTGAATATGAAGATGGAGATGGTGAACTTGAAAGAGTTGAAGTGAAGGAAGCATCTTCAGAGTCATGGGAAGCCATGAAAGAATCTTGGGGTGCAGTTTGGAAATATAACAAAGGGTCACAACTCAAAGCACCATTCTCTATAAGGCTAACCAACAAAGAGTCGAAGACTATTGAGGCTACCAATGTCATCCCTGCTGGCTGGAGACCTGGTAGTACTTATGTATCACATGTTAATTTTTGA 693 0.4343 MSCTLKHAFSHSLTLLASFSILLVVPSSCFNPKKIVNASIDSYSSDGSWSSGVATWYGPSNGDGSEGGACGYGRSVGEPPFSSMIAAGSAPLFDSGKGCGSCYEVKCTGNKACSGNPVRVVITDHCPDCGSDAHFDMSGAAFGEMAVSVMVEYEDGDGELERVEVKEASSESWEAMKESWGAVWKYNKGSQLKAPFSIRLTNKESKTIEATNVIPAGWRPGSTYVSHVNF 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00588 230 PANTHER EXPANSIN-B3 148 230 - -
Vimu3g00588 230 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Vimu3g00588 230 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Vimu3g00588 230 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Vimu3g00588 230 Pfam Lytic transglycolase 86 148 IPR009009 -
Vimu3g00588 230 Gene3D - 32 156 IPR036908 -
Vimu3g00588 230 SMART dpbb_1 85 153 IPR007112 -
Vimu3g00588 230 SUPERFAMILY Barwin-like endoglucanases 43 147 IPR036908 -
Vimu3g00588 230 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 145 226 IPR007117 -
Vimu3g00588 230 SUPERFAMILY PHL pollen allergen 143 226 IPR036749 -
Vimu3g00588 230 Pfam Expansin C-terminal domain 144 215 IPR007117 -
Vimu3g00588 230 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 170 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00588 Vimu-Chr3 6118600 6120673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00588 29 230 Expansin Gene Family AT1G65680 47.773 1.53e-71 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00588 - - gmx:548090 307.375