Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00578 ATGGCCGGAGTGAGGGAACAAGATCAGTACATGCCAATAGCAAATGTGTTAAGGATCATGCGAAAGATCTTACCAGCGCATGCAAAGATCTCCGATGAAGCTAAGGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGTTTCATCACTGCTGAAGCTAATGACCGATGTCAGCGCGAACAACGTAAGACTGTAACTGCTGAAGATGTTCTGTGGGCTATGGGAAAACTTGGTTTTGATGACTATGCTCAATCTCTTTCCATTTACCTTAATCGTTATCGCCAAAGTGAAGGAGACCGTGGTATGTCTGTGAGACGTGCTCCTACTTCTGTTCCTCCAATGGAGATGAACCCACCTTATCAACCTTATTATCCTCCTCATGGTTTTGGAATGTTTGACTATGATCCATCACACTCCATAGCTTCTTCTTCAAGATCAGGTGGATTTGTTCCAAACATTGATCCTTATCTTAACCCAAAACCTAATGATGATTTTGATCCTTTTGCCAATCCAAAACCTGCTGATGATAATAATATGTGA 540 0.4204 MAGVREQDQYMPIANVLRIMRKILPAHAKISDEAKETIQECVSEYISFITAEANDRCQREQRKTVTAEDVLWAMGKLGFDDYAQSLSIYLNRYRQSEGDRGMSVRRAPTSVPPMEMNPPYQPYYPPHGFGMFDYDPSHSIASSSRSGGFVPNIDPYLNPKPNDDFDPFANPKPADDNNM 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00578 179 Gene3D Histone, subunit A 2 111 IPR009072 GO:0046982
Vimu3g00578 179 FunFam Nuclear transcription factor Y subunit B-6 1 113 - -
Vimu3g00578 179 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Vimu3g00578 179 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Vimu3g00578 179 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Vimu3g00578 179 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Vimu3g00578 179 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 101 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vimu3g00578 179 MobiDBLite consensus disorder prediction 140 179 - -
Vimu3g00578 179 SUPERFAMILY Histone-fold 7 122 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00578 Vimu-Chr3 5999092 5999631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00578 4 138 CCAAT-HAP3 Transcription Factor Family AT5G47670 62.676 1.34e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu3g00578 CBFD_NFYB_HMF 9.9e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00578 K08065 - gmx:100811633 227.639