Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00575 ATGGTAATGGCTGTGGCTAGTGATGACTTGCTGGGTCAGAAAGCTTCGGCGATGAGAGCGTCTCTGGAGAGAAGCCAGACCATCACGGACGACGTTGTTTCGATTCTGGGCTCCTTCGACCACCGTCTTTCCGCCCTCGAAACCGCCATGCGACCTACCCAGATCAGAACTCATTCTATTCGGAAAGCTCACGAGAACATTGATAGGACTTTGAAGACTGCAGAGGCCATATTGGTCCACTTTGATCAATATTATCAGGCAGAAGCAAAAATAATTAAAGGACCACATGAAGATGTAAAGAGCTATCTTGAAGCAATTGATCAGCTGAGACGAAACATTAGATTTTTTAACAATAAAAAGGGTTTTAAGAATGATGATGGCATTTCCATCCGTGCCAATAATTTGATAGCCGAAGCTATTTCTAAGCTAGAAGAAGAGTTTAAGCGGCTATTATCATCTTACAGCAAACCTGTGGAGCCTGAACGCCTCTTTAGTTCTCTTCCAAACACAATGCGACCTTCATCAGCATCACCAGGTCATGATGATGATTCCAGCAGCAAGAATCATTCTTCTTATATCCATTCTGAGCCACATAAAAATAATGCTGATACTGTTGTATACACACCTCCTGTTCTTATACCACCAAGAATATTGCCGTTGCTCAATAATTTAACCGAGCAAATGGTTCAAGCTGGTCACCAACAACAGTTGCTCAAAATATACAGAGATACTCGTTCTAAAGTATTAGAAGAAAGCCTACAAAAGCTTGGAGTTGAGAAGCTCAACAAAGATGATGTTCAAAAGCTACAATGGGAGGTTTTGGAAGCCAAAATTGGAAACTGGATTCATTTCATGCGTATTGCTGTCAAATTGTTGTTTGCTGCCGAACGAAAAGTCTGTGATCAGATATTTGAAGGATTTGATTCGCTTAGTGATCAGTGTTTTGCTGAAGTAACTACAAACAGTATTTCCATGCTGCTTAGTTTTGGAGAAGCTATTGCCAAAAGCAAGAGATCACCTGAGAAGTTATTTGTGCTTTTGGACATGTATGAAATATTGCAAGAAATCCATTCAGAGATTGAAATACTCTTTAAAGGAAGAGCTTGCTCCAAAATAAGAGAAGCTGTAATGGGTTTGACAAAACAGCTTGCACAAACAGCCCAGGAAACCTTTGGAGATTTTGAAGAAGCAGTTGAAAAAGATGCTACAAAGACTGCAGTAACTGATGGAACTGTCCATCCTTTGACAAGCTATGTGATTAACTATGTGAAGTTTTTATTTGACTATCGGTCTACCTTAAACCAACTTTTCCAAGGGATTGAAGGTGAAAGTGATTCTTCACAGCTAGCTTCTGTGACCATGAGAATATTGCAAGCTCTTCAAACCAATTTAGATGGGAAATCTAAGCAATATAGAGACCCTGCTTTGACACACCTATTTCTCATGAACAATATTCATTATATTGTCAGATCAGTTCGAAGGTCTGAAGCGAAGGATTTGATGGGGGATGATTGGATACAACGACATAGGAAAATTGTGCAACAGCATGCCAATCAATACAAAAGAAATGCTTGGGCAAAGATTCTTCAATCCCTCTCAATTCAGGGCCTCATCTCATCAAGTGGTGGGGGTAGTACTGCTGGTGGGGATGGGGGCAGTAGTGGTGCTTCAAGAGCAGTTGTTAAAGAAAGGTTTAAGGCATTCAATACTATGTTTGAGGAACTCCATCAAAAACAATCTCAGTGGACAGTACCAGACACAGAGTTGCGAGAATCTCTCATTCTTGCAGTTGCTGAAGTCTTGTTGCCTGCCTATAGATCATTTGTGAAACGTTTCGGGCCTCTGGTGGAGAATGTAAAGAGTAGTCAGAGGTACATCAAATACAGTGCTGAAGATCTAGAGCGAATCCTAGGTGAATTTTTTGAAGGAAAAAACATGAATGATTCCAAGCGGTAA 1956 0.4064 MVMAVASDDLLGQKASAMRASLERSQTITDDVVSILGSFDHRLSALETAMRPTQIRTHSIRKAHENIDRTLKTAEAILVHFDQYYQAEAKIIKGPHEDVKSYLEAIDQLRRNIRFFNNKKGFKNDDGISIRANNLIAEAISKLEEEFKRLLSSYSKPVEPERLFSSLPNTMRPSSASPGHDDDSSSKNHSSYIHSEPHKNNADTVVYTPPVLIPPRILPLLNNLTEQMVQAGHQQQLLKIYRDTRSKVLEESLQKLGVEKLNKDDVQKLQWEVLEAKIGNWIHFMRIAVKLLFAAERKVCDQIFEGFDSLSDQCFAEVTTNSISMLLSFGEAIAKSKRSPEKLFVLLDMYEILQEIHSEIEILFKGRACSKIREAVMGLTKQLAQTAQETFGDFEEAVEKDATKTAVTDGTVHPLTSYVINYVKFLFDYRSTLNQLFQGIEGESDSSQLASVTMRILQALQTNLDGKSKQYRDPALTHLFLMNNIHYIVRSVRRSEAKDLMGDDWIQRHRKIVQQHANQYKRNAWAKILQSLSIQGLISSSGGGSTAGGDGGSSGASRAVVKERFKAFNTMFEELHQKQSQWTVPDTELRESLILAVAEVLLPAYRSFVKRFGPLVENVKSSQRYIKYSAEDLERILGEFFEGKNMNDSKR 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00575 651 Coils Coil 99 119 - -
Vimu3g00575 651 MobiDBLite consensus disorder prediction 182 196 - -
Vimu3g00575 651 PANTHER EXOCYST COMPLEX PROTEIN EXO70 58 643 IPR004140 GO:0000145|GO:0006887
Vimu3g00575 651 SUPERFAMILY Cullin repeat-like 77 642 IPR016159 -
Vimu3g00575 651 MobiDBLite consensus disorder prediction 167 181 - -
Vimu3g00575 651 Gene3D Exocyst complex component Exo70 75 651 - -
Vimu3g00575 651 MobiDBLite consensus disorder prediction 162 202 - -
Vimu3g00575 651 Pfam Exo70 exocyst complex subunit 280 638 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00575 Vimu-Chr3 5889407 5902261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00575 3 651 EXO70 exocyst subunit family AT5G03540 69.867 0.0 943
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00575 K07195 - gmx:100775958 1122.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00575 3 5889407 5902261 Vimu3g00575 3 5889407 5902261 ECH
Vimu6g02597 6 22560479 22562899 Vimu3g00575 3 5889407 5902261 PCT