Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00570 ATGTTGATCATGCTTTTGCTGATACAAACTCAACTTGGAGCAAGCACTGTGGTTGACCACAACACTTTCTCCTTTGTAACTTTCACTTCTGAGAGTTGCACAAATGGTGATCTTCTTTGCATGGGTTCAGCCACTGCTGGCAATGGGTATTTGAGTCTCACCCCAGAGTCACAACAAAGCAGCAACTCAAGTTCAACACTGTCTAACACAACCAGAAATGTTGGAAGGGTTTTGTACCCTCACCCTGTGAATGTTTGGCCTGCAATTATCTCCACCACATTCACTCTTAGGATCACTCCTTTTTCAGAAAATTCAACCAGCTATGGGGATGGAGTGGCACTGGTGTTTGCTAACGATAATAGGCCCTCACCAAATGACTCATATCTTGGCTTTTTTGATCAGTCTTCACCAGGTGGGGGTTTTCAACAGCTAGCTGTAGAGATGAACATTGTCATGAATGAATTTGATCAAGATGGAAGCCACATTGGGATAGTGACAACAAGCATCACAAATCCACTTGCATCTGAGAGTCTGAATAGCACTGGCATTGACCTCAGAAGTGGAAGAGACATTGAGGTCAAAGTAGACTATGATGGATGGAGTAAAATGATTTTTGTCTCTGTGGGATACCCAGAAAGCCAATTGAAGAATGTCCTCAACCATTCAATTGTTCTACCTGATATACTTCCAAGCTCCATTTATGTTGGTTTCACAGCCTCCACAGGCAACACTTTTCCTGAAAGCCACCAGGTCCTCAACTGGGTATTCACATCAGTGCCACTTCCTTTTCTTTCTGTTCAACACAGTAGAGTTGGCACCATCAAGACCTTATTGGTAATTTCCCTGGTGTGCTTATTTCCTTTTATTTCGATAGCTGTTTGGAGAAGATATGTGAGGGGTAAAAAGAAGGGTGATATAGAAAGCCTATCAAAGAAGGCTGCGGATATCCCCAAGGTGTTCACCTACAAGCAACTATCTAGAGCCACATGCAACTTCAGCCAGGAAAATCTTCTGGGAAAAGGTGCTTTTGGCAGTGTTTATAAAGGAATCATATCATACTCTGGAAAAACTGTTGCAGTAAAGAAGATTTCAGCAACTTCTAAACAAGGTGAAAGAGAGTTCTTAGCTGAAATATGTACCATAGGGCGTCTTAGCCACAAAAACTTAGTGAAGCTCCAAGGCTGGTGCATTGAAGGCAAGAATCTTCTATTGGTTTATGAATACATGCAAAATGGAAGCCTTGATCACTTCATAGCCAAAGGCAGTCTGAACTGGAAACTCAGGCACAGAGTATTGACAGGATTGGCATCAGCATTACTCTACCTTCATGAAGAGAGTGGAAACCCTTTTGTTCACAGAGATGTTAAGCCAAACAATGTCATGTTGGACTCAAATCACGATGCTCATTTAGGAGATTTTGGGCTAGCAAGACTACTCAAAGGTGAAGGCTCAGTGACCACAAATCTAAATGGAACTCTAGGATATTTGGCTCCTGAACTAAGCTTCACAGGGAGAGCAACACCAGAATCAGACGTGTATAGCTTTGGCATGGTAGTTCTTGAAGTGATATGTGGGAAAAGGTTAAACTGGATCAAGCAAGGGAACAGTTTTGTGGATTCTGTGTGGAATTTGCACGCAGAAAATGGTTTGGTTGAGTGTGTTGACAAAAAACTAGAGAACAAATTTGATGAGGAAGAAGCTAAAAGGGCACTGATAGTTGGTTTGGCATGTTTGCATCCTGATTCCATGTTGAGGCCAAGGATGAGAAAAGTGGTGAACATTTTTCAGAACCCAAATGAACCTTTGATGCAGTTACCAAAAGTGAGGCCTACAGGAGTTTATGTATCAGTTTCTTGCAGTTCATCTTCCTCAAACACTACCTCTAAAACTGAGGTGCAGCTCCAATCATCCACAACATCATCACATGAAAAATTCAACAGTATATGA 1947 0.4191 MLIMLLLIQTQLGASTVVDHNTFSFVTFTSESCTNGDLLCMGSATAGNGYLSLTPESQQSSNSSSTLSNTTRNVGRVLYPHPVNVWPAIISTTFTLRITPFSENSTSYGDGVALVFANDNRPSPNDSYLGFFDQSSPGGGFQQLAVEMNIVMNEFDQDGSHIGIVTTSITNPLASESLNSTGIDLRSGRDIEVKVDYDGWSKMIFVSVGYPESQLKNVLNHSIVLPDILPSSIYVGFTASTGNTFPESHQVLNWVFTSVPLPFLSVQHSRVGTIKTLLVISLVCLFPFISIAVWRRYVRGKKKGDIESLSKKAADIPKVFTYKQLSRATCNFSQENLLGKGAFGSVYKGIISYSGKTVAVKKISATSKQGEREFLAEICTIGRLSHKNLVKLQGWCIEGKNLLLVYEYMQNGSLDHFIAKGSLNWKLRHRVLTGLASALLYLHEESGNPFVHRDVKPNNVMLDSNHDAHLGDFGLARLLKGEGSVTTNLNGTLGYLAPELSFTGRATPESDVYSFGMVVLEVICGKRLNWIKQGNSFVDSVWNLHAENGLVECVDKKLENKFDEEEAKRALIVGLACLHPDSMLRPRMRKVVNIFQNPNEPLMQLPKVRPTGVYVSVSCSSSSSNTTSKTEVQLQSSTTSSHEKFNSI 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00570 648 ProSitePatterns Protein kinases ATP-binding region signature. 338 362 IPR017441 GO:0005524
Vimu3g00570 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Vimu3g00570 648 Gene3D - 18 265 - -
Vimu3g00570 648 FunFam Putative L-type lectin-domain containing receptor kinase S.7 19 269 - -
Vimu3g00570 648 CDD lectin_legume_LecRK_Arcelin_ConA 23 258 IPR001220 GO:0030246
Vimu3g00570 648 Gene3D Transferase(Phosphotransferase) domain 1 409 604 - -
Vimu3g00570 648 Gene3D Phosphorylase Kinase; domain 1 317 408 - -
Vimu3g00570 648 PANTHER - 59 599 - -
Vimu3g00570 648 Pfam Legume lectin domain 22 259 IPR001220 GO:0030246
Vimu3g00570 648 SUPERFAMILY Protein kinase-like (PK-like) 316 629 IPR011009 -
Vimu3g00570 648 ProSiteProfiles Protein kinase domain profile. 332 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00570 648 FunFam probable L-type lectin-domain containing receptor kinase S.5 317 408 - -
Vimu3g00570 648 FunFam probable L-type lectin-domain containing receptor kinase S.5 409 603 - -
Vimu3g00570 648 Pfam Protein kinase domain 333 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00570 648 MobiDBLite consensus disorder prediction 621 648 - -
Vimu3g00570 648 SMART serkin_6 332 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00570 648 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 259 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00570 Vimu-Chr3 5848351 5850845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00570 26 631 Receptor kinase-like Gene Family AT5G55830 37.220 4.24e-110 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu3g00570 Pkinase 2.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00570 - - vun:114190285 1150.19