Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00562 ATGTCAGATGAATTCTTTGTTAGAGGTGATGAGAGAAAAAAACTCAAGCGTAAGATGGAGGATATATCCTCTCCTGATATTGTAGATTCAGAGTTATTGCTATCTATGAGTCTTGGCAATAACAAAATGGTTGGTGAATCTTCATCTATGCCCATTTGCAATTCTTTGAAAAACCCAGTTGATTCATCCATTTCACCTCCAACACTAACAGAAAACCCTAATCATCAATTGATTGTGCCTAAGCAACGACAATTCTCATGCAAGTTTTGCAACAAAAAGTTTCCAAGCTCTCAAGCTTTAGGAGGGCATCAAAATGCTCACAGACGTGAAAGAGTTCTCTCAAGAATAGATAGAGAGTTTGATATGGGAACTTTTGGACTTGGTGTTCATATGTACCCTTATTCAACCATGGCTCATCAACACCATTTTCGTGGTCAAATACCCTTTTTTTATGAGTCTAACATGCACCCTATGACTCAAATGTCAACCATGCCATGGCCATTTGTACCTAGCTATGGAAATCAAGGTCTACACAACACCTCCACTTCAGGGCAACGATTTGGTATGGCCAACCTTGGAGGCATAAGTGTTGAAGCTCCACAAAATGTATATCATAGGGGATTAGGGTTTGGTTTTGAACATAACCAAGTTCATCCATTTGATCCAACTAATGGAGCTACCATGGCTCGTCCAAGTCTTAGTGGCCTTATGAGAAATCAGTATAATATTGGGAACCAACCATTTTAA 747 0.3922 MSDEFFVRGDERKKLKRKMEDISSPDIVDSELLLSMSLGNNKMVGESSSMPICNSLKNPVDSSISPPTLTENPNHQLIVPKQRQFSCKFCNKKFPSSQALGGHQNAHRRERVLSRIDREFDMGTFGLGVHMYPYSTMAHQHHFRGQIPFFYESNMHPMTQMSTMPWPFVPSYGNQGLHNTSTSGQRFGMANLGGISVEAPQNVYHRGLGFGFEHNQVHPFDPTNGATMARPSLSGLMRNQYNIGNQPF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00562 248 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 32 192 IPR044246 GO:0009788
Vimu3g00562 248 SUPERFAMILY beta-beta-alpha zinc fingers 82 112 IPR036236 -
Vimu3g00562 248 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Vimu3g00562 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Vimu3g00562 248 Gene3D Classic Zinc Finger 70 121 - -
Vimu3g00562 248 Pfam C2H2-type zinc finger 85 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00562 Vimu-Chr3 5744294 5745040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00562 83 176 C2H2 Transcription Factor Family AT1G24625 38.298 1.67e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g00562 zf-C2H2_6 2.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00562 - - gmx:102663144 293.123