Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00560 ATGGCCAATACCATATCAAATTCTCTCTTAGTCTTCGAAACTTCAGAAGAAGCTGCACGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGCCACAGAGCCATTCTCAACTTCCCAAATGAGTATCAGTCTTCTAATCCAAACTCTTCTTTGCCTATGACTTTAACAACACTTCCACCTCCTTCTTCCTCTTCTTCTTCTTCTTCCTATTCTTCTTATTCTATTGATAATGGAGAAATTATGCAAGGTAATTATACTTTTGAGTTGGAGTACTTGGACAATAAGTTGCTTGAAGAACTCCTTCAGATGCAAGATAACAGACATCTCTTCAAGTGA 336 0.381 MANTISNSLLVFETSEEAARAYDAAAFHFRGHRAILNFPNEYQSSNPNSSLPMTLTTLPPPSSSSSSSSYSSYSIDNGEIMQGNYTFELEYLDNKLLEELLQMQDNRHLFK 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00560 111 ProSiteProfiles AP2/ERF domain profile. 1 39 IPR001471 GO:0003700|GO:0006355
Vimu3g00560 111 MobiDBLite consensus disorder prediction 46 72 - -
Vimu3g00560 111 SUPERFAMILY DNA-binding domain 11 40 IPR016177 GO:0003677
Vimu3g00560 111 PANTHER DNA-BINDING DOMAIN 12 102 IPR044808 GO:0003700|GO:0009873
Vimu3g00560 111 SMART rav1_2 3 45 IPR001471 GO:0003700|GO:0006355
Vimu3g00560 111 Gene3D AP2/ERF domain 6 40 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00560 Vimu-Chr3 5649051 5649668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00560 9 108 AP2-EREBP Transcription Factor Family AT3G23230 51.000 1.60e-19 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00560 - - gmx:100500462 115.546