Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00553 ATGGAGAACTGTGCAGAGAATATTACCATGAATTGTGAAAGCAATGACGAATTTATTAACGTAGTTGATAGTGTATCTGACTTGGTTCCTACGGTCAACATGTGTTTCGACAGTATGAAAGATGCAAAGAAATATTATTCAGATTATGGAAAAAGAATTGGATTTGGTGTTCGTACAAGAACTTCAAAAAAGGACAACAATAATGAATTGTATTATTTGAGATTGGTATGTTCAAGGGAAGGTAGATATGTCTCTAACATTCGTCCTGAAGTAAAAACCCTTCCTAGTCAAACAAAGCAATGCCCTGCGGGGATAACATTTGCCAAAAAAGATGACAAATGGGTTGTGAGGACTGTTATGGTAGATCACAGTCATGATCTTTGTCCACAAACTTCCAATCTCATTCGTGCCAACAGAAAATTGGAC 426 0.3662 MENCAENITMNCESNDEFINVVDSVSDLVPTVNMCFDSMKDAKKYYSDYGKRIGFGVRTRTSKKDNNNELYYLRLVCSREGRYVSNIRPEVKTLPSQTKQCPAGITFAKKDDKWVVRTVMVDHSHDLCPQTSNLIRANRKLD 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00553 142 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 7 140 - -
Vimu3g00553 142 Pfam FAR1 DNA-binding domain 44 128 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00553 Vimu-Chr3 5488222 5489084 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu3g00553 FAR1 1.2e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00553 - - vra:106766675 223.787