Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00548 ATGTTAGAGCTCCAAGGATGCAGCGGCTGTTGCAGAGAAAAATATGTTTGGAGGACACCGTGGGATGTTGCAGTGAAAATTCTTAAAGTGCAAGGTTTTGATCCTGGGCGATTTGAAGAATTTCTAAAGGAGGTCTCACTCATGAAGCGCCTACGGCATCCAAATATTGTACTCTTGATGGGTGCAGTTATTCAACCCCCTAAGTTATCAATTGTAACAGAGTATTTATCTAGAGGCAGTTTGTATGAACTTCTGCACATGCCCAATGTTGGATCATCACTTAGTGAGAGGTGTCGCTTAAAAATGGCTTATGATGTGGCAAGCGGAATGAATTATCTTCATCAAATGAGACCCCCCATTGTTCATAGAGATTTGAAGTCTCCAAATCTTTTGGTTGATGATTCATACACTGTTAAGGTATGTGACTTTGGTCTTTCACGCACAAAGGCAAACACATTTCTTTCTTCTAAAACCGCAGCTGGGACTCCTGAATGGATGGCACCCGAAGTCATCAGAGGAGAACTGTCAAACGAAAAGTGTGATGTATTCAGCTTTGGTGTAATTTTGTGGGAACTAGTCACCCTGCAACAACCATGGAGACATTTAAACCCTTCACAGGTTGTTGCGGCTGTTGGTTTTATGGACAAAAGGCTAGATATTCCAAGGCATGTGAATCCTGAAGTTGCAGCCTTGATTGAGCTCTCCTGGGCCACGGAACCCTGGAGACGGCCTTCTTTCTCCTATATTATGAAATGTTTGCAGCAAATAATTACTGATGCTAGAGGGTGA 789 0.4284 MLELQGCSGCCREKYVWRTPWDVAVKILKVQGFDPGRFEEFLKEVSLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLHMPNVGSSLSERCRLKMAYDVASGMNYLHQMRPPIVHRDLKSPNLLVDDSYTVKVCDFGLSRTKANTFLSSKTAAGTPEWMAPEVIRGELSNEKCDVFSFGVILWELVTLQQPWRHLNPSQVVAAVGFMDKRLDIPRHVNPEVAALIELSWATEPWRRPSFSYIMKCLQQIITDARG 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00548 262 SMART serkin_6 2 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00548 262 FunFam Serine/threonine-protein kinase CTR1 78 261 - -
Vimu3g00548 262 PIRSF ILK 3 261 - -
Vimu3g00548 262 Pfam Protein tyrosine and serine/threonine kinase 19 253 IPR001245 GO:0004672|GO:0006468
Vimu3g00548 262 PRINTS Tyrosine kinase catalytic domain signature 114 132 IPR001245 GO:0004672|GO:0006468
Vimu3g00548 262 PRINTS Tyrosine kinase catalytic domain signature 161 171 IPR001245 GO:0004672|GO:0006468
Vimu3g00548 262 PRINTS Tyrosine kinase catalytic domain signature 224 246 IPR001245 GO:0004672|GO:0006468
Vimu3g00548 262 PRINTS Tyrosine kinase catalytic domain signature 73 86 IPR001245 GO:0004672|GO:0006468
Vimu3g00548 262 PRINTS Tyrosine kinase catalytic domain signature 180 202 IPR001245 GO:0004672|GO:0006468
Vimu3g00548 262 SUPERFAMILY Protein kinase-like (PK-like) 6 253 IPR011009 -
Vimu3g00548 262 FunFam serine/threonine-protein kinase STY46-like 5 77 - -
Vimu3g00548 262 Gene3D Phosphorylase Kinase; domain 1 7 77 - -
Vimu3g00548 262 ProSiteProfiles Protein kinase domain profile. 1 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00548 262 CDD STKc_MAP3K-like 16 251 - -
Vimu3g00548 262 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Vimu3g00548 262 Gene3D Transferase(Phosphotransferase) domain 1 78 261 - -
Vimu3g00548 262 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 16 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00548 Vimu-Chr3 5413318 5422503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00548 16 260 MAP Kinase Kinase Kinase AT5G03730 71.774 1.51e-118 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vimu3g00548 PK_Tyr_Ser-Thr 8.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00548 K14510 - pvu:PHAVU_007G245400g 480.715