Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00546 ATGCACCTCTCTAGGGAGTATATGATTGATTTAATTGGAAGGCCTGGGGCAACATGTCAACCTGATTCTTTTCTGAATTCTGCTTCTTCAATGTTGGTTGCTTCACCATTATGTCATCCAAAGTTCAAGCCAGTTGAAACAGCTGAATATACAAAGACACTTGCTCAATTGTATTTCTTGGACAGTCAAGCGCTGCATCTTGTATTTGATACTACATCAGGACCTGCTGTTAATCACAGTGACAAAATGGATCTGCAGCGAACCGAAGCTTTGGGTGCAAATTATGCTGGTGGAAACAGCCATCTGTTTGCTTTGATTCCTGGTGCAGAGGAGTATGAGTATTTCAATGAAGTAGACCAGACAGTCTTGGATTATCCAAGTCATGAAGTTGATCTTGATGAGGAGGATCTGGATATTCCTTGGAGTGAACTTATTTTGAAGGAGAACATTGGGACAGGGTCATTTGGAACTGTCCTTCGTGCAGACTGGCGTGGTTCCGAAATTAAGCATGGGAATGCAACTTGA 525 0.4229 MHLSREYMIDLIGRPGATCQPDSFLNSASSMLVASPLCHPKFKPVETAEYTKTLAQLYFLDSQALHLVFDTTSGPAVNHSDKMDLQRTEALGANYAGGNSHLFALIPGAEEYEYFNEVDQTVLDYPSHEVDLDEEDLDIPWSELILKENIGTGSFGTVLRADWRGSEIKHGNAT 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00546 174 Gene3D Phosphorylase Kinase; domain 1 129 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00546 Vimu-Chr3 5406707 5408269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00546 3 168 MAP Kinase Kinase Kinase AT5G03730 39.665 1.51e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00546 K14510 - gmx:100807496 310.842