Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00539 TTGTCTAAGCAGAACTGGCAATTCGCAGACTTTTCACCATTCAACAGACTCTCGCTGTTAATCGAAGTCTTGTTCGTCGTCGTCTGCCGTTCCGAAGCACCAACGAACGTCGAAACCAACATTGATGTAGCTTTTGAAGCTTCCCACCACGATACTTGTGGGTGGGAGGATGCTCTCTCAAGGGTTCTCTCGCGATTGTGGGTGAAAGGATGCTCCTCTCACAAAAATGAGCTTGGTTCGAAGGTAGAAGAGCTTCCTGGTTTTGAAGGGCCTCTTCCATTTGAACTGGAAACGGGGTACATAGGATTGGGAGAAAGAGATGATGATATGCAAGTGTTTTACTACTTTATCAAGTCAGAGAATGACCCTGCAAAAGATCCTCTTTTGCTTTGGCTAACTGGAGGTCCTGGTTGCTCTTCGTTTTCTGGTCTTGCTCTTCAAATAGGTCCATTTGCATTCAAGACAGAGAAGTACGATGGGAACGTGCCAAATTTGGTCTTGAGGCCACAGTCCTGGACGAAGGTGAGTAGCATTATTTTTGTAGATTTGCCTTTAGGAACTGGCTTCTCGTATGCAAAAAATCTCACTGCTAATAGAAGTGACTGGAAGTTAGTTCACCATACTCATCAATTTCTTAGGAAGTGGCTGATTGATCACCCTGAATTTCTTTCAAATGACTTTTACATGGGAGGTGATTCATATTCTGGCATACCTGGCCCTGCCATTGTTCAAGAAATTTTAAAGGGAAATGAAATTGGTCTTCAACCACCAATAAATCTCCAGGGATATCTGCTAGGGAACCCATTAACAACAAGAAAAGAAAAAAATGACCAAATCCCATTTGCTCATGGTATGGGACTTATTTCTGATGAACTCTATGAGTGCCTCTCAGGAATCGATATACACAACATCTTGGATCGCTATTGCAAAGATGATTCTACTAAGAAACATGAAGGTCCATGGATTAGATCTCTGACTCAAAAGTTTGAGTCCTCTCTTAATTCTCTTAATTCTCCTCTCACAGAGTTAGACACAAGATGCAAAACATATAATTTTTTCCTTGCCACTCAATGGGCCAATGATGAGAGTGTTCGGAAATCGCTGCACATTCGAGAGGGAACAAAGGGTAAATGGGAACGTTGTTGGACTGGTGATTTTGAGTATGAGATCTCTAGTAGCTTCGCCTTTCACGTAAATCTCAGTGCGAAAGGATATCGTTCTTTAATATATAGTGGGGATCACGATGCAGTTGTTCCTTTCATGTCGACTCAAGCATGGATCAGAGCTCTGAACTACTCCATTGAAAGCTTCTCTAGATCCAAATCTGAACCTGTACGACACCATGTTGGTGCTTCGAATGTCAATTTCACGACAATGCGAGAGTATGGAACTTCACAGAGGGTTCCCGGCAACGAGCAGAAGAAGATAGTAACTGGAGGTTTAGATGGGAATACTCAAGTTCCTTTTTTGAAGAAGATTGAGCAGAAGGGAGTTGAAGGGTGTGATTTAACAAAAGTGTATTGGATTTTTGATGAAAGTTATGCCCTTTATTCCAAAGATTTGTGTCCTTTCATAGATGAAGGTTTTGATTGTTTGGGGAATGGAAAGATTGGATAG 1617 0.4187 MSKQNWQFADFSPFNRLSLLIEVLFVVVCRSEAPTNVETNIDVAFEASHHDTCGWEDALSRVLSRLWVKGCSSHKNELGSKVEELPGFEGPLPFELETGYIGLGERDDDMQVFYYFIKSENDPAKDPLLLWLTGGPGCSSFSGLALQIGPFAFKTEKYDGNVPNLVLRPQSWTKVSSIIFVDLPLGTGFSYAKNLTANRSDWKLVHHTHQFLRKWLIDHPEFLSNDFYMGGDSYSGIPGPAIVQEILKGNEIGLQPPINLQGYLLGNPLTTRKEKNDQIPFAHGMGLISDELYECLSGIDIHNILDRYCKDDSTKKHEGPWIRSLTQKFESSLNSLNSPLTELDTRCKTYNFFLATQWANDESVRKSLHIREGTKGKWERCWTGDFEYEISSSFAFHVNLSAKGYRSLIYSGDHDAVVPFMSTQAWIRALNYSIESFSRSKSEPVRHHVGASNVNFTTMREYGTSQRVPGNEQKKIVTGGLDGNTQVPFLKKIEQKGVEGCDLTKVYWIFDESYALYSKDLCPFIDEGFDCLGNGKIG 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00539 538 Gene3D alpha/beta hydrolase 80 476 IPR029058 -
Vimu3g00539 538 Pfam Serine carboxypeptidase 86 444 IPR001563 GO:0004185|GO:0006508
Vimu3g00539 538 SUPERFAMILY alpha/beta-Hydrolases 82 447 IPR029058 -
Vimu3g00539 538 PRINTS Carboxypeptidase C serine protease (S10) family signature 181 191 IPR001563 GO:0004185|GO:0006508
Vimu3g00539 538 PRINTS Carboxypeptidase C serine protease (S10) family signature 215 240 IPR001563 GO:0004185|GO:0006508
Vimu3g00539 538 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 180 IPR001563 GO:0004185|GO:0006508
Vimu3g00539 538 Pfam PMR5 N terminal Domain 500 536 IPR025846 -
Vimu3g00539 538 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 80 435 IPR001563 GO:0004185|GO:0006508
Vimu3g00539 538 FunFam Serine carboxypeptidase-like 19 75 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00539 Vimu-Chr3 5321353 5328204 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00539 354 434 Calmodulin-binding Proteins AT2G22960 57.317 1.51e-24 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00539 K16296 - gmx:100780069 610.527