Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00527 ATGATGTTCATATTTCTGTCCCTGAAGTTCCAACCCTTTTGGTTGATTCTTCTAATGTTTTTTTCTGCATTTCCCCATTCTCATGCTTTCAATTCTTCTGGAATTGCTTCAGAAGCAAATGCTCTGTTGAACTGGAAAGCCAGTCTTGACAAGCAGAGTCAAGCTTCTCTCTCTTCATGGACTGCCAACACTTCTTGCAATTGGCTCGGAATTTCATGCGATCACTCCAATCATGTCTCCCAAATAAATCTTCAAAATATTGGATTAAGAGGTACGCTTGAAAATCTCAACTTCTCAATGCTTACAAACATTCACACTCTAAATCTGAGTAACAACTTTCTGAATGAAAGTATTCCTCCACAAATTGGAGTTCTGTCCAATCTAGTTGTTCTTGATTTGTCTGCTAATAAACTCTCTGGAATTATCCCTTCTGAAATAACACAGTTGATTAGCCTTCAGAAGTTGAACATGAGTTATAATACTTTCAGTGAGTCCCTTCCCCAAGAAATAGGGAGATTGACGGAGCTGAGAATGCTTCACGTTCCTTGGTGCAATCTCACAGGGGCAATCCCAATCTCTATAGAAAAGTTGAACTATTTGATTCATCTAGATGTAGCAGGCAACAACCTTTCTGGCAGCATTCCTCAGAGAATTTGGCACATGGACCTAAAGCATTTGTCATTTGGAACTAATAAATTCCATGGCTCCATTCCCAAAGCAATTGTGAATATGAGGAACCTGGAGTTTCTATATCTTGGGGATAGTGGCCTTTCTGGCACCATGCCTCAAGAAATTTACATGATGGGGAAACTAATATATCTCAACTTGAGCAGTTGTAATCTTTCTGGTCACATTCCTCATGAAATTGGACTATTGAGAAAACTCGGTGAACTTGATTTGTCTCAGAATTTTCTCTCTGGTAAAATCCCTTCCACAATTGGAAACTTGAGCAATCTAAGTTTTCTTTCCCTTTATGACAACCAATTCTCTAGCTTTATTCCGGATGAAATAGGTAACTTGGTCAATTTGGAATCTATTTTTCTTTATCAAAACAAACTCTCTGGACTAATCCCTGCTTCAATAGGTAACTTGGTCAATTTAGAATCCATTTATCTTAATCAAAATAATCTCTTCGGACCAATCCCTACTTCCATAAGTAACCTGATCAATTTGAAATCCATTGGTCTTTATCAAAACAACCTCTCTGGACCAATCCCGACTTCCATAGGTAACCTGGTCAATTTGGAATCCATTTATCTTAATCAAAATAATCTCTCTGGACCAATCCCTACTTCCATAGGTAACCTGGTCAATTTGGAATCCATTTTTCTTTATCAAAACAACCTTTCTGGACCAATCCCTACTTTAATAGGTAACCTGGTCAATTTGAAATCCATTTCTCTTTACCAAAACAAACTCTCTGGACTAATCCCTGCTTCAATAGGTAACCTGGTCAATTTAGAATCCATTTATCTTAATCAAAATAATCTCTTCGGACCAATCCCTACTTCCATAAGTAACCTGATCAATTTGAAATCCATTGCTCTTTATCAAAACAACCTCTCTGGACCAATCCCGACTTCCATAGGTAACCTGGTCAATTTGGAATCCATTTATCTTAATCAAAACAATCTCTCTGGACCAATCCCTACTTCCATAGGTAACCTGGTCAATTTGGAATCCATTTTTCTTTATCAAAACAACCTCTCTGGACCAATCCCTACTTCCATAGGTAACCTGGTCAATTTGGAATCCATTTATCTTAATCAAAATAATCTCTCTGGACCAATCCCTACTTCCATAGGTAACCTGGTCAATTTGGAATCCATTTTTCTTTATCAAAACAACCTTTCTGGACCAATCCCTACTTCAATAGGTAACCTGGTCAATTTGAAATCCATTTCTCTTTATCGAAACAATCTCTCTGGACAAATCCCTACTTCCATAGGTAACTTGGTCAATTTGGAAACCATTGTTCTTAATCAAAACAACCTTTCTGGACCAATCCCTACTTCCATAGGTAACTTGATCAATTTGGAATACATTTTTCTTTATCAAAACAATCTCTTTGGACCAATCCCTCCTTCGATAGGTAACCTGGTCAATTTGGAATCCATTTATCTTAATCAAAATAATCTCTCTGGACCAATCCCTACTTCCATAGGTAACCTGATCAATTTGGAATCCATTTTTCTTTTTCAAAACAACCTTTCTGGACCAATCCCTACTTCAATAGGTAACCTGGTCAATTTGAAATCCATTTCTCTTTATCGAAACAATCTCTCTGGACAAATCCCTACTTCCATAGGTAACTTGGTCAATTTGGAAACCATTGTTCTTAATCAAAACAACCTTTCTGGACCAATCCCTACTTCCATAGGTAACTTGATCAATTTGGAATACATTTTTCTTTATCAAAACAATCTCTTTGGACCAATCCCTCATTCGATAGGTAACCTGGTCAATTTGAAAACCATTTCTCTTTCTCAAAACAACCTCTCTGGATCCATTCCTTCCACTATTGGAAATTTGTCGAAGCTTCATGACTTATCTTTATTTGACAATAATCTCAGTGGCAAGATTCCAATAGAAATGAACAGGATTATTGCTTTAGAAAATTTGCAAATATTTGATAATAATTTTGTTGGCCATTTACCTCACAACATTTGTGTTGGTGGAAAGTTGGCAAAATTTACCGCTAGCAATAACCATTTCACTGGGCATATTCCAGAGAGTTTGAAGAATTGCTCTAGCCTTATACGAGTGAGACTTGAGGAAAATCAACTAACTGGAAACATAACAGATGCTTTTGGTGTACTTCCAAACCTGGATTACATCGAATTGAGTGAAAACAATTTTTACGGTCATCTTTCACCAAATTGGGGGAACTTTCGTAGCCTCACAAGCCTCAAGATCTCAAATAATAACTTATCAGGTGTTATCCCACCGGAGCTAGGCGGGGCAACCAAATTACAAGCACTTCATTTATCCTCAAATCATCTTACAGGAAACATTCCACGAAATTTATGTAATTTGGTCTTGTTGTATGATCTATCACTCAACAACAATAATCTTTCAGGAAATATTCCCATAGAAATTGTATCAATGAAGAATCTTCAAATTTTGAGTCTTGGATCTAATAATTTGTCTGGCTCAATTCCAATCCAACTTGGAAATTTATTCAATTTATGGAACATGAATTTGAGCCTGAATAAATTTGAGGGAAATATTCCCTTAGAGTTTGGCAAATTAATATCTCTTACAACTCTTGATCTCAGTGAAAATTTGTTGAGGGGAAGATTAAAACATGTGCTTGGAGGATTACAAAAATTAGAAACATTGAATCTCTCTCACAATAGTCTCTCAGGTGATCTTTCTAGCTTCGATGAAATGATGAGCTTGACATCTATTGATATATCTTACAATGATTTTGAGGGTCCACTTCCAAACATTCCAGTCTTTCGCAATGCTACAATAGACGCAGTAAGAAATAATAAAGGCTTGTGTGGCAATGTAAGTGGCTTAAAGCCTTGCCCAACACTAAGTGGGAAATCACATAATCATATGACAAAGAAAGGCATAACAATGGTTCTAACCCTTACTTTGGGCACTCTAATGCTGGCATTGTTTGCTTTTGGAGTCTTGTATTATTTATGCAAAAATTCAGTGAAACTGGAAGATCAAGCTACCAATTTGCAAACTTCAAACACATTTGCAATATGGAGTTTTGATGGCAAAATGGTATTCGAGAATATTGTTGAAGCCACTGAAAATTTTGACGATAAGCATCTCATTGGAGTTGGAGGACAGGGACAAGTTTACAAAGCAATGTTACCCTTAGGTCAAGTTGTGGCTGTAAAGAAACTTCATTCAGTTCCAAATGAAGAAAACCTCAATGTGAAAGCTTTCACGAGTGAGATCCAAGCTCTGACAGAAATTCGCCACCGTAACATTGTAAAGTTATATGGGTTTTGTTCACATTCCCAATGGTCATTTATGGTGTGTGAATTCTTGGAGAAGGGAAATGTCCATAATATTTTGAAGAATGATGAAGAAGCAATTGCATTTGATTGGAATAAGAGAGTGAATGTTATTAAAGATGTAGCAAATGCTTTATTGTACATGCATTATGATTGCTCACCACCAATTATTCATCGTGATATATCAAGTAAAAATGTCCTTTTGGATTTGGAATATGTGGCACATGTCTCTGATTTCGGAACAGCCAAGTTTCTTAATCCCGATTCATCCAATTGGACCTCATTTGTAGGAACCTTCGGATATGCCGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAATGTGACGTGTATAGTTTTGGAGTGTTGGCATGGGAAATACTTCTTGGAAAGCACCCTGCTGATTTTATATCTTCCTCACTATCATCTTTATCCACTGGTGTGGCCTTAACACTTGATCACCTGACACTGATGGAGAAGTTGGACCAGCGTCTTCCTCCTCCAACAAAATGTTCAGTTAAAGAAGTGACATCAATTGCAAAGATAGCACTTGCTTGTTTGACTGAAAGTCCACGATCTCGTCCTAATATGAAGGAGGTTGTCAATGAACTTGTAGTGTAA 4605 0.3705 MMFIFLSLKFQPFWLILLMFFSAFPHSHAFNSSGIASEANALLNWKASLDKQSQASLSSWTANTSCNWLGISCDHSNHVSQINLQNIGLRGTLENLNFSMLTNIHTLNLSNNFLNESIPPQIGVLSNLVVLDLSANKLSGIIPSEITQLISLQKLNMSYNTFSESLPQEIGRLTELRMLHVPWCNLTGAIPISIEKLNYLIHLDVAGNNLSGSIPQRIWHMDLKHLSFGTNKFHGSIPKAIVNMRNLEFLYLGDSGLSGTMPQEIYMMGKLIYLNLSSCNLSGHIPHEIGLLRKLGELDLSQNFLSGKIPSTIGNLSNLSFLSLYDNQFSSFIPDEIGNLVNLESIFLYQNKLSGLIPASIGNLVNLESIYLNQNNLFGPIPTSISNLINLKSIGLYQNNLSGPIPTSIGNLVNLESIYLNQNNLSGPIPTSIGNLVNLESIFLYQNNLSGPIPTLIGNLVNLKSISLYQNKLSGLIPASIGNLVNLESIYLNQNNLFGPIPTSISNLINLKSIALYQNNLSGPIPTSIGNLVNLESIYLNQNNLSGPIPTSIGNLVNLESIFLYQNNLSGPIPTSIGNLVNLESIYLNQNNLSGPIPTSIGNLVNLESIFLYQNNLSGPIPTSIGNLVNLKSISLYRNNLSGQIPTSIGNLVNLETIVLNQNNLSGPIPTSIGNLINLEYIFLYQNNLFGPIPPSIGNLVNLESIYLNQNNLSGPIPTSIGNLINLESIFLFQNNLSGPIPTSIGNLVNLKSISLYRNNLSGQIPTSIGNLVNLETIVLNQNNLSGPIPTSIGNLINLEYIFLYQNNLFGPIPHSIGNLVNLKTISLSQNNLSGSIPSTIGNLSKLHDLSLFDNNLSGKIPIEMNRIIALENLQIFDNNFVGHLPHNICVGGKLAKFTASNNHFTGHIPESLKNCSSLIRVRLEENQLTGNITDAFGVLPNLDYIELSENNFYGHLSPNWGNFRSLTSLKISNNNLSGVIPPELGGATKLQALHLSSNHLTGNIPRNLCNLVLLYDLSLNNNNLSGNIPIEIVSMKNLQILSLGSNNLSGSIPIQLGNLFNLWNMNLSLNKFEGNIPLEFGKLISLTTLDLSENLLRGRLKHVLGGLQKLETLNLSHNSLSGDLSSFDEMMSLTSIDISYNDFEGPLPNIPVFRNATIDAVRNNKGLCGNVSGLKPCPTLSGKSHNHMTKKGITMVLTLTLGTLMLALFAFGVLYYLCKNSVKLEDQATNLQTSNTFAIWSFDGKMVFENIVEATENFDDKHLIGVGGQGQVYKAMLPLGQVVAVKKLHSVPNEENLNVKAFTSEIQALTEIRHRNIVKLYGFCSHSQWSFMVCEFLEKGNVHNILKNDEEAIAFDWNKRVNVIKDVANALLYMHYDCSPPIIHRDISSKNVLLDLEYVAHVSDFGTAKFLNPDSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLAWEILLGKHPADFISSSLSSLSTGVALTLDHLTLMEKLDQRLPPPTKCSVKEVTSIAKIALACLTESPRSRPNMKEVVNELVV 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00527 1534 SUPERFAMILY L domain-like 578 689 - -
Vimu3g00527 1534 Gene3D Ribonuclease Inhibitor 189 288 IPR032675 -
Vimu3g00527 1534 Gene3D Ribonuclease Inhibitor 35 188 IPR032675 -
Vimu3g00527 1534 Pfam Leucine Rich Repeat 366 388 IPR001611 GO:0005515
Vimu3g00527 1534 Pfam Leucine Rich Repeat 486 508 IPR001611 GO:0005515
Vimu3g00527 1534 Pfam Protein kinase domain 1260 1531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00527 1534 SUPERFAMILY L domain-like 894 1158 - -
Vimu3g00527 1534 Pfam Leucine rich repeat 1086 1144 IPR001611 GO:0005515
Vimu3g00527 1534 Pfam Leucine rich repeat 126 186 IPR001611 GO:0005515
Vimu3g00527 1534 SUPERFAMILY Protein kinase-like (PK-like) 1239 1532 IPR011009 -
Vimu3g00527 1534 Gene3D Ribonuclease Inhibitor 461 528 IPR032675 -
Vimu3g00527 1534 Gene3D Ribonuclease Inhibitor 627 700 IPR032675 -
Vimu3g00527 1534 Gene3D Ribonuclease Inhibitor 529 625 IPR032675 -
Vimu3g00527 1534 Gene3D Transferase(Phosphotransferase) domain 1 1338 1534 - -
Vimu3g00527 1534 FunFam MDIS1-interacting receptor like kinase 2 isoform A 454 550 - -
Vimu3g00527 1534 ProSiteProfiles Protein kinase domain profile. 1259 1534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00527 1534 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1383 1395 IPR008266 GO:0004672|GO:0006468
Vimu3g00527 1534 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 219 453 - -
Vimu3g00527 1534 SUPERFAMILY L domain-like 687 982 - -
Vimu3g00527 1534 FunFam Uncharacterized protein 890 1187 - -
Vimu3g00527 1534 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 768 1532 - -
Vimu3g00527 1534 Gene3D Ribonuclease Inhibitor 292 455 IPR032675 -
Vimu3g00527 1534 Gene3D Ribonuclease Inhibitor 701 867 IPR032675 -
Vimu3g00527 1534 Gene3D Ribonuclease Inhibitor 868 1180 IPR032675 -
Vimu3g00527 1534 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 667 766 - -
Vimu3g00527 1534 SMART LRR_sd22_2 1036 1057 - -
Vimu3g00527 1534 SMART LRR_sd22_2 412 438 - -
Vimu3g00527 1534 SMART LRR_sd22_2 652 678 - -
Vimu3g00527 1534 SMART LRR_sd22_2 796 815 - -
Vimu3g00527 1534 SMART LRR_sd22_2 340 358 - -
Vimu3g00527 1534 SMART LRR_sd22_2 1084 1110 - -
Vimu3g00527 1534 SMART LRR_sd22_2 700 726 - -
Vimu3g00527 1534 SMART LRR_sd22_2 580 595 - -
Vimu3g00527 1534 SMART LRR_sd22_2 604 630 - -
Vimu3g00527 1534 SMART LRR_sd22_2 460 478 - -
Vimu3g00527 1534 SMART LRR_sd22_2 748 774 - -
Vimu3g00527 1534 SMART LRR_sd22_2 820 846 - -
Vimu3g00527 1534 SMART LRR_sd22_2 292 318 - -
Vimu3g00527 1534 SMART LRR_sd22_2 364 390 - -
Vimu3g00527 1534 SMART LRR_sd22_2 532 558 - -
Vimu3g00527 1534 SMART LRR_sd22_2 484 510 - -
Vimu3g00527 1534 SMART LRR_sd22_2 125 154 - -
Vimu3g00527 1534 FunFam MDIS1-interacting receptor like kinase 2 1338 1534 - -
Vimu3g00527 1534 ProSiteProfiles Leucine-rich repeat profile. 1110 1132 IPR001611 GO:0005515
Vimu3g00527 1534 FunFam MDIS1-interacting receptor like kinase 2 isoform A 787 889 - -
Vimu3g00527 1534 SMART LRR_typ_2 125 148 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 1108 1130 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 700 724 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 268 292 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 989 1012 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 412 436 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 101 123 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 820 844 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 316 339 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 484 508 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 748 772 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 340 363 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 532 556 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 580 604 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 364 388 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 149 173 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 628 652 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 964 988 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 1036 1060 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 460 483 IPR003591 -
Vimu3g00527 1534 SMART LRR_typ_2 1084 1107 IPR003591 -
Vimu3g00527 1534 SUPERFAMILY RNI-like 253 594 - -
Vimu3g00527 1534 Gene3D Phosphorylase Kinase; domain 1 1220 1337 - -
Vimu3g00527 1534 FunFam Leucine-rich repeat receptor protein kinase MSP1 1222 1337 - -
Vimu3g00527 1534 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 551 647 - -
Vimu3g00527 1534 SUPERFAMILY L domain-like 36 307 - -
Vimu3g00527 1534 Pfam Leucine rich repeat N-terminal domain 37 74 IPR013210 -
Vimu3g00527 1534 FunFam Nuclear pore complex protein NUP107 35 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00527 Vimu-Chr3 5209691 5214416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00527 435 982 Receptor kinase-like Gene Family AT4G08850 38.321 1.22e-101 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu3g00527 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00527 - - gmx:100793419 1746.1