Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00526 ATGCAACTCAGAGATTCTTATCCTCTCATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAATTATTATTTTACTATTCACTTTTATGATGTTCATATTTCCAACGCTTCTGTCCATGAAGTTCCAATCCTTTTGTTTGCATCTTCTAATGTTCTTTTCTGCATTTCCCCATTCTCATGCTTTCAATTCTTCTGGAATTGCTTCAGAAGCAAATGCTCTGCTGAAGTGGAAAGCCAGCCTTGACAAGCAGAGTCAAGCTTCTCTCTATTCATGGACTGCCAACACTTCTTGCAATTGGCTCGGAATTGCATGTGATCACTCCAATCATGTCTCCCAAATAAATCTTCAAAATATTGGATTAAGAGGTACGCTTGAAAGTCTCAACTTCTCAATGCTTACAAACATTAACACTCTAAATCTTAGTAACAACTTTTTGAATGGAAGTATTCCTCCTCAAATTGGAGTTCTGTCCAATCTAGTTGTTCTTGATTTGTCTGCTAATAAGCTCTCTGGGATTATCCCTTCTGAAATAACACAGTTGATTAGCCTTCAAAAGTTGAACATGAGTTATAATACTTTCAGTAAGTCCCTTCCCCAAGAAATAGGGAGATTGAGGGAGCTTAGAATGCTTCATGTTCCTTGGTGCAATCTCACAGGGACAATTCCAATCTCTATAGAAAAGTTGAACAGTTTGATTCATCTAGATGTAAAAGGCAATAACCTTTCTGGTAGCATTCCTCAGAGAATTTGGCAGATGGACCTAATCCGTTTATCACTTGCAATCAATAACTTCCATGGTTCCATCCCCAAAGAAATTGTGAATATGACGAACCTAGAGATTCTATATCTTGCGGAAAGTGGCCTTTCTGGCACCATCCCCCAAGAAATTGGGATGTTGAGGAAATTAATAGAGCTCGACATAAGTTCTTCTGATCTTTTTGGGTCCATACCTATTTCAATTGGAGCTTTGACCAATCTATCACTTCTCAGCTTACATGACAATCAACTTTCTGGTCATATTCCTAGTGAAATTGGTAAGTTGATCAACCTCAAGATGCTATATCTTCAAAGTAATAATCTCTCTAACTTTATTCCTCGTGAAATTGGATATTTGAGCAATCTAAATAAAATTTACCTTAAAGGAAACCAATTGTCAGGTTTTATTCCTCATGAAATTGGATTTTTGAGAAAACTCAGTGAACTTGATTTGTCTGAGAATTTTCTCTCTGGTAAAATCCCTTCCACAATTGGAAACTTGAGCAATCTAAGTTTTCTTTACCTTTATGACAACCAATTATCTGGCTATATCCCGGATGAAATAGGAAATTTGCATTCCCTTCTAACAATCCAGTTGCTGGTCAATAATCTCTCTGGACCAATCCCTACTTCCATAGGTAACCTGATCAATTTGGAATCTATTTTACTTCATCAAAACAACCTTTCTGGACCAATCCCTAATTCCATAGGTAACCTGGTCAATTTGGAATCCGTTATACTTTCTCAAAACAACCTCTCTGGATCCATTCCTTCCACTATTGGAAATTTGTCGAAGCTCCGTAAATTATCTTTATTTGACAATAATCTTAGTGGCAAGATTCCAATAGAAATGAACAGGATTATAGGTTTGGAAAATTTGCAGCTAGGTGATAATAATTTTGTTGGCCATTTACCTCACAACATTTGTGTTGGTGGAAATTTGAAGAACTGCTCTAGCCTTATACGAGTGAGACTTGAGGAAAATCAACTAACTGGAAACATAACAGATGCTTTTGGTGTACTTCCAAATCTGGATTACATCGAATTGAGTGGAAACAATTTTTATGGTCATCTTTCACCAAATTGGGGGAAGTTCCGCAGCCTCACAAGCCTCAAGATCTCTAACAATAATTTATCAGGTGTTATCCCACCAGAACTAAGCGAGGCAACCGAATTACGTGAACTTCAGTTATCCTCAAATCATCTTACAGGAAGCATTCCACAAGATTTATCTAAATTGGTTTTGTTATTTCGTCTATCACTCAACAACAATAATCTTTCAGGAAATATTCCCGCAAAAATTGCATCAATGAAGAATCTTCAAATTTTGAGGCTTGGATCTAATAATTTGTCTGGTTTAATTCCAGACCAACTTGGAAATTTGCTCAGTTTATTGGAAATGAATTTGAGTCAGAACAAATTTGAGGGAAATATTCCCTTAGAGCTTGGCAAATTAATATCTCTTACAACTCTTGATCTTAGTGAAAATTTGTTGAAGGGAACATTAACACATGTGCTTGGAGGATTACAAAAATTAGAAACATTGAATCTCTCTCACAATAGTCTCTCAGGTGATCTTTCTAGCTTTGATGAAATGATGAGCTTGACATCTATTGATATATCTTACAATGAGTTTGAGGGTCCACTTCCAAACATTCCAGTCTTTCGCAATGCTACAATGGAAGCTGTAAGAAATAATAAAGGCTTGTGTGGCCATATTAGTGGCTTGGAGCCTTGCCCAACATCAGGTCGAAAGTCGCATAATCAAATGATAAAGAAAGTCATAATACTGGTTTTACCCCTTACTTTGGGCGGTCTATTACTGGCGTTATTTATTTTTGGAATCTTTTATTATTTATGCAAAACTTCAGTGAAACTGGAAGATCAAGCTACCAATTTGCAAACTGCAAACAAATTTGCAATATGGAGTTTTGATGGCAAAATGGTATTTGAGAATATTGTTGAAGCCACTGAAAATTTTGACGATAAGCATCTCATTGGAGTTGGAGGACAGGGACAAGTTTACAAAGCAATGTTACCCTCAGGTCAAGTTGTGGCTGTAAAGAAACTGCATTCAGTTCCAAATAAAGAAAAGCTGAATGTGAAAGCTTTCAGAAGTGAGATCCAAGCTCTGACAGAAATTCGCCATCGTAACATTGTAAAGTTATATGGGTTTTGTTCACATTCCCAATGGTCATTTATGGTGTGTGAATTCTTGGAGAAGGGAAATGTCCAGAATATTTTGAAGGATGATGAAGAAGCAATTGCATTTGATTGGAATAAGAGAGTGAATGTTATTAAAGATGTAGCAAATGCTTTATTGTACATGCATTATGATTGCTCACCACCAATTATTCATCGTGATATATCAAGTAAAAATGTCCTTTTGGATTTGGAATATGTGGCACATGTCTCTGATTTCGGAACAGCCAAGTTTCTTAATCCCGATTCATCCAATTGGACCTCATTTGTAGGAACCTTCGGATATGCCGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAATGTGACGTGTATAGTTTTGGAGTGTTGGCATGGGAAATACTTATGGGAAAGCATCCTGGTGATTTTATATCTTCCTTATTATCATCTTCATCCACTGCTGATCATATGACATTGATGGATAAGTTGGAGCAGCGTCTCCCTCCTCCAACTAAACGTTTACTTAAAGAGGTGACATCAGTTGCGAAGATAACACTTGCTTGCATGACTGAAAGTCCACGATCTCGCCCTACTATGAAAGAGGTTGTCAATGAGCTTGTAGTGAAATAA 3570 0.3641 MQLRDSYPLIIIIIIIIIIIIIIIIIIIILLFTFMMFIFPTLLSMKFQSFCLHLLMFFSAFPHSHAFNSSGIASEANALLKWKASLDKQSQASLYSWTANTSCNWLGIACDHSNHVSQINLQNIGLRGTLESLNFSMLTNINTLNLSNNFLNGSIPPQIGVLSNLVVLDLSANKLSGIIPSEITQLISLQKLNMSYNTFSKSLPQEIGRLRELRMLHVPWCNLTGTIPISIEKLNSLIHLDVKGNNLSGSIPQRIWQMDLIRLSLAINNFHGSIPKEIVNMTNLEILYLAESGLSGTIPQEIGMLRKLIELDISSSDLFGSIPISIGALTNLSLLSLHDNQLSGHIPSEIGKLINLKMLYLQSNNLSNFIPREIGYLSNLNKIYLKGNQLSGFIPHEIGFLRKLSELDLSENFLSGKIPSTIGNLSNLSFLYLYDNQLSGYIPDEIGNLHSLLTIQLLVNNLSGPIPTSIGNLINLESILLHQNNLSGPIPNSIGNLVNLESVILSQNNLSGSIPSTIGNLSKLRKLSLFDNNLSGKIPIEMNRIIGLENLQLGDNNFVGHLPHNICVGGNLKNCSSLIRVRLEENQLTGNITDAFGVLPNLDYIELSGNNFYGHLSPNWGKFRSLTSLKISNNNLSGVIPPELSEATELRELQLSSNHLTGSIPQDLSKLVLLFRLSLNNNNLSGNIPAKIASMKNLQILRLGSNNLSGLIPDQLGNLLSLLEMNLSQNKFEGNIPLELGKLISLTTLDLSENLLKGTLTHVLGGLQKLETLNLSHNSLSGDLSSFDEMMSLTSIDISYNEFEGPLPNIPVFRNATMEAVRNNKGLCGHISGLEPCPTSGRKSHNQMIKKVIILVLPLTLGGLLLALFIFGIFYYLCKTSVKLEDQATNLQTANKFAIWSFDGKMVFENIVEATENFDDKHLIGVGGQGQVYKAMLPSGQVVAVKKLHSVPNKEKLNVKAFRSEIQALTEIRHRNIVKLYGFCSHSQWSFMVCEFLEKGNVQNILKDDEEAIAFDWNKRVNVIKDVANALLYMHYDCSPPIIHRDISSKNVLLDLEYVAHVSDFGTAKFLNPDSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLAWEILMGKHPGDFISSLLSSSSTADHMTLMDKLEQRLPPPTKRLLKEVTSVAKITLACMTESPRSRPTMKEVVNELVVK 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00526 1189 Pfam Leucine rich repeat 745 802 IPR001611 GO:0005515
Vimu3g00526 1189 Pfam Leucine rich repeat 163 223 IPR001611 GO:0005515
Vimu3g00526 1189 Pfam Leucine rich repeat 355 412 IPR001611 GO:0005515
Vimu3g00526 1189 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1042 1054 IPR008266 GO:0004672|GO:0006468
Vimu3g00526 1189 Pfam Protein kinase domain 919 1185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00526 1189 SUPERFAMILY Protein kinase-like (PK-like) 903 1186 IPR011009 -
Vimu3g00526 1189 Gene3D Phosphorylase Kinase; domain 1 879 996 - -
Vimu3g00526 1189 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 258 346 - -
Vimu3g00526 1189 ProSiteProfiles Protein kinase domain profile. 918 1188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00526 1189 FunFam Leucine-rich repeat receptor protein kinase MSP1 881 996 - -
Vimu3g00526 1189 Gene3D Transferase(Phosphotransferase) domain 1 997 1188 - -
Vimu3g00526 1189 PANTHER LEUCINE RICH REPEAT KINASE 2 457 1187 - -
Vimu3g00526 1189 SUPERFAMILY RNI-like 262 612 - -
Vimu3g00526 1189 SUPERFAMILY L domain-like 76 344 - -
Vimu3g00526 1189 FunFam Leucine-rich receptor-like protein kinase family protein 347 443 - -
Vimu3g00526 1189 FunFam Nuclear pore complex protein NUP107 72 229 - -
Vimu3g00526 1189 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 444 538 - -
Vimu3g00526 1189 FunFam MDIS1-interacting receptor like kinase 2 997 1189 - -
Vimu3g00526 1189 SMART LRR_typ_2 648 671 IPR003591 -
Vimu3g00526 1189 SMART LRR_typ_2 425 449 IPR003591 -
Vimu3g00526 1189 SMART LRR_typ_2 767 789 IPR003591 -
Vimu3g00526 1189 SMART LRR_typ_2 695 718 IPR003591 -
Vimu3g00526 1189 SMART LRR_typ_2 234 258 IPR003591 -
Vimu3g00526 1189 SMART LRR_typ_2 138 160 IPR003591 -
Vimu3g00526 1189 SMART LRR_typ_2 329 352 IPR003591 -
Vimu3g00526 1189 SMART LRR_typ_2 743 766 IPR003591 -
Vimu3g00526 1189 SMART LRR_typ_2 623 647 IPR003591 -
Vimu3g00526 1189 SMART LRR_typ_2 186 210 IPR003591 -
Vimu3g00526 1189 SMART LRR_typ_2 497 521 IPR003591 -
Vimu3g00526 1189 SMART LRR_typ_2 401 424 IPR003591 -
Vimu3g00526 1189 SMART LRR_typ_2 353 377 IPR003591 -
Vimu3g00526 1189 SMART LRR_typ_2 162 185 IPR003591 -
Vimu3g00526 1189 Gene3D Ribonuclease Inhibitor 74 183 IPR032675 -
Vimu3g00526 1189 Gene3D Ribonuclease Inhibitor 476 545 IPR032675 -
Vimu3g00526 1189 Gene3D Ribonuclease Inhibitor 402 475 IPR032675 -
Vimu3g00526 1189 ProSiteProfiles Leucine-rich repeat profile. 769 791 IPR001611 GO:0005515
Vimu3g00526 1189 Gene3D Ribonuclease Inhibitor 546 840 IPR032675 -
Vimu3g00526 1189 Gene3D Ribonuclease Inhibitor 263 399 IPR032675 -
Vimu3g00526 1189 PRINTS Leucine-rich repeat signature 165 178 - -
Vimu3g00526 1189 PRINTS Leucine-rich repeat signature 767 780 - -
Vimu3g00526 1189 Pfam Leucine rich repeat N-terminal domain 73 111 IPR013210 -
Vimu3g00526 1189 FunFam Uncharacterized protein 544 846 - -
Vimu3g00526 1189 SMART LRR_sd22_2 401 427 - -
Vimu3g00526 1189 SMART LRR_sd22_2 162 191 - -
Vimu3g00526 1189 SMART LRR_sd22_2 497 523 - -
Vimu3g00526 1189 SMART LRR_sd22_2 329 352 - -
Vimu3g00526 1189 SMART LRR_sd22_2 743 769 - -
Vimu3g00526 1189 SMART LRR_sd22_2 353 382 - -
Vimu3g00526 1189 SUPERFAMILY L domain-like 572 829 - -
Vimu3g00526 1189 Gene3D Ribonuclease Inhibitor 184 262 IPR032675 -
Vimu3g00526 1189 SMART serkin_6 918 1188 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00526 Vimu-Chr3 5200217 5205908 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00526 64 669 Receptor kinase-like Gene Family AT4G08850 34.906 7.74e-93 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu3g00526 Pkinase 7.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00526 - - gmx:106794215 1432.93