Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00525 ATGACAGTGAATGAAGTGGTGGTTGAAAGTTCGAATACGGTAAGTACTCATTTACCAAGCGACGGTTTAGGCTCTATTCCTCCTGAAATTGGATTTTTGAGAAAACTCGGAGAACTTGATTTGTCTCATAATTTTCTCTCTGGTAAAATCCCTTCCACAATTGGAAACTTGAGCAATCTAAACTTTCTTTACCTTTATGACAACCAATTATCTGGCCTTATCCCGGATGAAATAGGAAATTTGCATTCCCTTCTAACAATCCAGTTGTTGCGCAATAATCTCTCTGGACTAATTTCTACTTTCATAGGTAACTTGGTCAATTTGGAAACCATTTTTCTTTCTCAAAATAATCTCTTTGGACCAATCCCTACTTCCATAGGTAACTTGGTCAATTTGGAAACCATTGATCTTAGTCAAAACAAACTTTCTGGATCCATTCCTTCCATTATTGGAAATTTGTCGAAGCTTCCTGATAATAATTTTGTTGGCCATTTACCTCACAACATTTGTGTTGGTGGAAAGTTGGCAAAATTTTCCGCTAGCAATAACCATTTTACTGGCCATATTCCAGAGAATGCTTTTGGTGTACTTCCAAATTTGGATTACATCGAATTGAGTGAAAACAATTTTTATGGTCATCTTTCACCAAATTGGGGGAAGTTTCGTAGCCTCACAAGCCTCAAGATCTCTAACAATAATTTATCAGGTGTTATCCCACCAGAACTAAGCGAGGCAACCGAATTACGTGAACTTCAGTTATCCTCAAATCATCTTACAGGAAGCATTCCACAAGATTTATCTAAATTGGTTTTGTTGTTTCATCTATCACTCAACAACAATAATCTTTCAGGAAATATTCGCACAAAAATTGCATCAATGAAGAATCTTCAAATTTTGAGGCTCGGATCTAATAATTTGTCTGGGTTAATTCCATACCAACTTGGAAATTTGCTCAGTTTATTGGAAATGAATTTGAGTCAGAATAAATTTGAGGGAAATATTCCTCCAGAGTTTGACAAATTAGTATCCCTTACAATTCTTGATATCAGTGAAAATTTGTTGAGGGGAAGATTAACACATAAACTTGGAGGATTAGAAAAATTAGAAACGTTGAATCTCTCTCACAATAGTCTCTCAGGTGATCTTTCTAGCTTTGATGATATGATGAGCTTGACATCTATTGATATATCTTACAATGAGTTTGAGGGTCCACTTCCAAACATTCCAGTCTTTCGCAATGCTACAATTGACGTAGTAAGAAATAACAAAGGCTTGTGTGGCAATGTTAGTGGCTTAAAGCCTTGCCTAACACTAAGTGGGAAATCACATAATCATATGACAAAGAAAGGCATAACAATGGTTCTAACCCTTACTTTGGGCACTCTAATGCTGACATTGTTTGTTTTCGGAGTCTTGTATTATTTATGTAAAACTTCAATGGAAATGGAAGAGCAGCCTCTCAATTTACAAACTCTAAACACATTTGCAATATGGAGTTTCAATGGAAAAATGGTATTCGAGAATATTGTTGAAGCCACTGAAAATTTTGACAATAAGCATCTCATTGGAGTTGGAGGACAGGGACAAGTTTACAAAGCAATGTTACCCTCAGGTCAAGTTGTGGCTGTAAAGAAACTGCATTCAGTTCCAAATGAAGAAAAGCTGAATGTGAAAGCTTTCAGAAGTGAGATCCAAGCTCTGACAGAAATTCGCCATCGTAACATTGTAAAGTTATATGGGTTTTGTTCACATTCCCAATGGTCATTTATGGTGTGTGAATTCTTGGAGAAGGGAAATGTCCAGAATATTTTGAAGGATGATGAAGAAGCAATTGCATTTGATTGGAATAAGAGAGTGAATGTTATTAAAGATGTAGCAAATGCTTTATTGTACATGCATTATGATTGCTCACCACCAATTATTCATCGTGATATATCAAGTAAAAATATCCTTTTGGATTTGGAATATGTGGCACATGTCTCTGATTTCGGAACAGCCAAGTTTCTTAATCCCGATTCATCCAATTGGACCTCATTTGTAGGAACCTTCGGATATGCCGCTCCAGTGTTGGCATGGGAAATACTTATGGGAAAGCAACCTGGTGATTTTATATCTTCCTCATTATCATCTTCATCCATTGCTGATCATATGACATTGATGGATAAGTTGGAGCAGCGTCTCCCTCTTCCAACAAGACATTTAGTTAAAGAGGTGGCATCAGTTGCAAAGATAACACTTGCTTGCATGACTGAAAGTTCACGATCTCGCCCTACTATGAAGGAGGTTGTCAATGAGCTTGTAGTGTAA 2307 0.3671 MTVNEVVVESSNTVSTHLPSDGLGSIPPEIGFLRKLGELDLSHNFLSGKIPSTIGNLSNLNFLYLYDNQLSGLIPDEIGNLHSLLTIQLLRNNLSGLISTFIGNLVNLETIFLSQNNLFGPIPTSIGNLVNLETIDLSQNKLSGSIPSIIGNLSKLPDNNFVGHLPHNICVGGKLAKFSASNNHFTGHIPENAFGVLPNLDYIELSENNFYGHLSPNWGKFRSLTSLKISNNNLSGVIPPELSEATELRELQLSSNHLTGSIPQDLSKLVLLFHLSLNNNNLSGNIRTKIASMKNLQILRLGSNNLSGLIPYQLGNLLSLLEMNLSQNKFEGNIPPEFDKLVSLTILDISENLLRGRLTHKLGGLEKLETLNLSHNSLSGDLSSFDDMMSLTSIDISYNEFEGPLPNIPVFRNATIDVVRNNKGLCGNVSGLKPCLTLSGKSHNHMTKKGITMVLTLTLGTLMLTLFVFGVLYYLCKTSMEMEEQPLNLQTLNTFAIWSFNGKMVFENIVEATENFDNKHLIGVGGQGQVYKAMLPSGQVVAVKKLHSVPNEEKLNVKAFRSEIQALTEIRHRNIVKLYGFCSHSQWSFMVCEFLEKGNVQNILKDDEEAIAFDWNKRVNVIKDVANALLYMHYDCSPPIIHRDISSKNILLDLEYVAHVSDFGTAKFLNPDSSNWTSFVGTFGYAAPVLAWEILMGKQPGDFISSSLSSSSIADHMTLMDKLEQRLPLPTRHLVKEVASVAKITLACMTESSRSRPTMKEVVNELVV 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00525 768 Gene3D Phosphorylase Kinase; domain 1 477 594 - -
Vimu3g00525 768 SUPERFAMILY L domain-like 10 238 - -
Vimu3g00525 768 PANTHER LEUCINE RICH REPEAT KINASE 2 102 767 - -
Vimu3g00525 768 SMART LRR_sd22_2 341 367 - -
Vimu3g00525 768 SMART LRR_sd22_2 129 155 - -
Vimu3g00525 768 SMART LRR_sd22_2 105 124 - -
Vimu3g00525 768 SMART LRR_sd22_2 33 59 - -
Vimu3g00525 768 Pfam Protein kinase domain 517 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00525 768 FunFam Leucine-rich repeat receptor protein kinase EMS1 26 119 - -
Vimu3g00525 768 ProSitePatterns Tyrosine protein kinases specific active-site signature. 640 652 IPR008266 GO:0004672|GO:0006468
Vimu3g00525 768 FunFam Leucine-rich repeat receptor-like protein kinase TDR 155 437 - -
Vimu3g00525 768 SUPERFAMILY Protein kinase-like (PK-like) 497 766 IPR011009 -
Vimu3g00525 768 ProSiteProfiles Leucine-rich repeat profile. 131 153 IPR001611 GO:0005515
Vimu3g00525 768 SUPERFAMILY L domain-like 158 427 - -
Vimu3g00525 768 ProSiteProfiles Leucine-rich repeat profile. 367 389 IPR001611 GO:0005515
Vimu3g00525 768 ProSiteProfiles Protein kinase domain profile. 516 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00525 768 SMART LRR_typ_2 57 80 IPR003591 -
Vimu3g00525 768 SMART LRR_typ_2 246 269 IPR003591 -
Vimu3g00525 768 SMART LRR_typ_2 129 153 IPR003591 -
Vimu3g00525 768 SMART LRR_typ_2 365 387 IPR003591 -
Vimu3g00525 768 SMART LRR_typ_2 293 316 IPR003591 -
Vimu3g00525 768 SMART LRR_typ_2 33 56 IPR003591 -
Vimu3g00525 768 SMART LRR_typ_2 221 245 IPR003591 -
Vimu3g00525 768 SMART LRR_typ_2 317 340 IPR003591 -
Vimu3g00525 768 Gene3D Transferase(Phosphotransferase) domain 1 595 690 - -
Vimu3g00525 768 Gene3D Transferase(Phosphotransferase) domain 1 691 768 - -
Vimu3g00525 768 Pfam Leucine Rich Repeat 367 383 IPR001611 GO:0005515
Vimu3g00525 768 Pfam Leucine Rich Repeat 131 153 IPR001611 GO:0005515
Vimu3g00525 768 Pfam Leucine Rich Repeat 36 57 IPR001611 GO:0005515
Vimu3g00525 768 Pfam Leucine rich repeat 222 282 IPR001611 GO:0005515
Vimu3g00525 768 Pfam Leucine rich repeat 295 354 IPR001611 GO:0005515
Vimu3g00525 768 FunFam Leucine-rich repeat receptor protein kinase MSP1 479 594 - -
Vimu3g00525 768 Gene3D Ribonuclease Inhibitor 157 436 IPR032675 -
Vimu3g00525 768 Gene3D Ribonuclease Inhibitor 8 156 IPR032675 -
Vimu3g00525 768 PRINTS Leucine-rich repeat signature 365 378 - -
Vimu3g00525 768 PRINTS Leucine-rich repeat signature 132 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00525 Vimu-Chr3 5175477 5178172 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00525 24 688 Receptor kinase-like Gene Family AT4G08850 43.785 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu3g00525 Pkinase 5.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00525 - - vun:114189705 1092.03