Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00523 ATGAAGTTCCAACCCTTTTGGTTGCTTCTTCTAATGTTCTTTTCTGCTTTTCCCCATTCTCATGCTTTCATTTCTTCTGAAGCAAATGCTCTGCTGAAGTGGAAAGCCAGCCTTGACAAGCAGAGTCAAGGTTCTCTCTCTTCATGGACTGCCAACACTTCTTGCAATTGGTTTGGAATTGCATGTGATCACTCCAATCATGTCTCCCAAATAAATCTTCAAAATATTGGATTAAGAGGTACGTTTGAAAATCTCAACTTCTCAATGCTTACAAACATTCACACTCTAAATGTAAGTAACAATTCCTTGAATGGAAGTATTCCTCCTCAAATTGGAGTTCTGTCCAATCTAGTTGTTCTTGATTTGTCTGCTAATAAGCTCTCTGGGATTATCCCTTCTGAAATAACACAGTTGATTAGCCTTCAAAAGTTGAACATGAGTTATAATACTTTCAGTGAGTCCCTTCCCCAAGAAATAGGGAGATTGAGGGAGCTGAGAATGCTTCATGTTCCTTGGTGTAATCTCACAGGGACAATCCCAAACTCTATAGAAAAGTTGAACAATTTATTGCATCTAGATGTAGGAGGCAACAACCTTTCTGGCAGCATTCCTCAGAGAATTTGGCACATGGACCTAAAGCTTTTGTCATTTGGAACTAATAAATTCCATGGTTCCATTCCCAAAGAAATTGTGAATATGAGGAACCTGGAGATTCTATATCTTGGGGAAAGTGGCCTTTCTGGCACCATGCCCCAAGAAATTGACATGCTGGGGAAACTAATATATCTCAACATGAACCGTTGTAATCTTTCTGGTCACATTCCTCGTGAAATTGGATATTTGAGCAATCTAAATAAACTTTTCCTTGAAGGAAACCAATTGTCAGGTTTTATTCCTCATGAAATTGGATTTTTGAGAAAACTCAGTGAACTTGATTTGTCTGAGAATTTTCTCTCTGGTAAAATCCCTTCCACAATTGGAAACTTGAGCAATCTAAGTTTTCTTTATCTTTATGACAACCAATTCTCTGGCTTTATCCCGGATGAAATAGGAGATTTGCATTCCCTTCTAACAATCCAGTTGCTGGGCAATAATCTCTCTGGACCAATCCCTACTTCCATAGGTAATCTGGTCAATTTGGAATCCATTTTACTTGATCAAAACAACCTCTCTGGACCAATTCCTACTTCCATAGGTAACCTGGTCAATTTAGAATTCATTTTTCTTTCTCAAAACAACCTCTCTGGATCAATCCCTACTTCCATAGGTAACCTGGTCAATTTGGAATCCGTATCTCTTTCTCAAAACAAACTTTCTGGATCCATTCCTTCCACTATTGGAAATTTGTCGAAGCTTCGTGAATTATTTTTACTTGACAATAATCTCAGTGGCAAGATTCCAATAGAAATTAACAGGATTATAGATTTGGAAATTTTGCAGATAGGTGATAATAATTTTGTTGGCCATTTACCTCAAAACATTTGTATTGGTGGAAAGTTGGCAAAATTTTCCGCTATCAATAACCATTTCACTGGCCACATTCCAGAGAGTTTGAAGAATTGCTCTAGCCTTATACGAGTGAGACTTCAGGAAAATCAACTAACTGGAAACATAACAGATGCTTTTGGTGTACTTCCAAACTTGGATTACATCGAATTGAGTAAAAACAATTTTTATGGTCATCTTCCACCAAATTGGGGGATGTTCCGTAGCCTCACAAGCCTCAAGATCTCTAACAATAATTTATCAGGTGTTATCCCACCAGAACTAAGTGAGGCAACCGAATTACAAGAACTTCAGTTATCCTCAAATCATCTTACAGGAAGCATTCCACAAGATTTATCTAAATTGGTTTTGTTGTTTCGTCTATCACTCAACAACAATAATCTTTCAGGAAATATTCCCTCAAAAATTGCATCAATGAAGAATCTTCAAATTTTGAGGCTTGGATCTAATAATTTGTCTGGGTTAATTCCAGACCAACTTGGAAATTTGCCCAGTTTATTGGAAATGAATTTGAGTCAGAATAAATTTGAGGGAAATATTCCTCCAGAGCTTGAAAAATTAATATCTCTTACAACTCTTGATCTCAGTGAAAATTTGTTGAGGGGAAGATTAACACATAAATTTGGAGGATTAGAAAAATTAGAAACGTTGAATCTCTCTCACAATAGTCTCTCAGGTGATCTTTCTAGCTTTGATGATATGATGAGCTTGACATCTATTGATATATCTTACAATGAGTTTGAGGGTCCACTTCCAAACATTCCAGTCTTTCGCAATGCTACAATTGACGCAGTAAGAAATAATAAAGGCTTGTGTGGCAATGTTAGTGGCTTAAAGCCTTGCCAAACACTAAGTGGGAAATCACATAAGCATATGACAAAGAAAGTCATAACAATGGTTCTACCCCTTACTTTGGGCACTCTAATGCTGGCATTGTTTGTTTTTGGAGTCTTGTATTATTTATGCAAAACTTCAGTGAAAATGGAAGAGGAAGCTACCAATTTACAAACTCCAAACACATTTCCAATATGGAATTTTGATGGCAAAATGGTATTTCAGAATATTGTTGAAGCCACTGAAAACTTTGACGATAAGCATCTCATTGGAGTTGGAGGACAGGGACAAGTTTACAAAGCAATGTTACCCTCAGGTCAAGTTGTGGTTGTAAAGAAACTGCATTCAGTTCCAAATGAAGAAAAGCTCAATGTGAAAGCTTTCACGAGTGAGATCCAAGCTCTGACAGAAATTCGCCATCGTAACATTGTAAAGTTATATGGGTTTTGTTCACATTCCCAATGGTCATTTATGGTGTGTGAATTCTTGGAGAAGGGCAGTGTCCAGAATATTTTGAAGGATGATGAAGAAGCAATTGCATTTGATTGGAATAAGAGAGTGAATGTTATTAAAGATGTAGCAAATGCTTTATTCTACATGCATTATGATTGTTCACCACCAATTATTCATCGCGATATATCAAGTAAAAATATCCTTTTGGATTTGGAATATGTGGCACATGTCTCTGATTTCGGAACAGCCAAGTTTCTTAATCCCAATTCATCCAATTGGACCTCATTTGTAGGAACATTCGGATATGCCGCTCCAGAACTTGCATACACAATGGAAGTGAATGAAAAATGTGACGTGTATAGTTTTGGAGTATTGGCATGGGAAATACTTATGGGAAAGCATCCTGGTGATTTTATATCTTCCTTATTATCATCTTCATCCACTGCTGATCATATGACATTGATGGATAAGTTGGAGCAGCGTTTCCCTCCTCCAACTAAACGTTTACTTAAAGAGGTGGCATCAGTTGCGAAGATAGCACTTGCTTGCATGACTGAAAGTCCACGATCTCGCCCTATTATGAAGGAGGTTGTCAATAAGCTTGTAGTGTAA 3405 0.3727 MKFQPFWLLLLMFFSAFPHSHAFISSEANALLKWKASLDKQSQGSLSSWTANTSCNWFGIACDHSNHVSQINLQNIGLRGTFENLNFSMLTNIHTLNVSNNSLNGSIPPQIGVLSNLVVLDLSANKLSGIIPSEITQLISLQKLNMSYNTFSESLPQEIGRLRELRMLHVPWCNLTGTIPNSIEKLNNLLHLDVGGNNLSGSIPQRIWHMDLKLLSFGTNKFHGSIPKEIVNMRNLEILYLGESGLSGTMPQEIDMLGKLIYLNMNRCNLSGHIPREIGYLSNLNKLFLEGNQLSGFIPHEIGFLRKLSELDLSENFLSGKIPSTIGNLSNLSFLYLYDNQFSGFIPDEIGDLHSLLTIQLLGNNLSGPIPTSIGNLVNLESILLDQNNLSGPIPTSIGNLVNLEFIFLSQNNLSGSIPTSIGNLVNLESVSLSQNKLSGSIPSTIGNLSKLRELFLLDNNLSGKIPIEINRIIDLEILQIGDNNFVGHLPQNICIGGKLAKFSAINNHFTGHIPESLKNCSSLIRVRLQENQLTGNITDAFGVLPNLDYIELSKNNFYGHLPPNWGMFRSLTSLKISNNNLSGVIPPELSEATELQELQLSSNHLTGSIPQDLSKLVLLFRLSLNNNNLSGNIPSKIASMKNLQILRLGSNNLSGLIPDQLGNLPSLLEMNLSQNKFEGNIPPELEKLISLTTLDLSENLLRGRLTHKFGGLEKLETLNLSHNSLSGDLSSFDDMMSLTSIDISYNEFEGPLPNIPVFRNATIDAVRNNKGLCGNVSGLKPCQTLSGKSHKHMTKKVITMVLPLTLGTLMLALFVFGVLYYLCKTSVKMEEEATNLQTPNTFPIWNFDGKMVFQNIVEATENFDDKHLIGVGGQGQVYKAMLPSGQVVVVKKLHSVPNEEKLNVKAFTSEIQALTEIRHRNIVKLYGFCSHSQWSFMVCEFLEKGSVQNILKDDEEAIAFDWNKRVNVIKDVANALFYMHYDCSPPIIHRDISSKNILLDLEYVAHVSDFGTAKFLNPNSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLAWEILMGKHPGDFISSLLSSSSTADHMTLMDKLEQRFPPPTKRLLKEVASVAKIALACMTESPRSRPIMKEVVNKLVV 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00523 1134 Gene3D Ribonuclease Inhibitor 278 362 IPR032675 -
Vimu3g00523 1134 Pfam Leucine Rich Repeat 307 329 IPR001611 GO:0005515
Vimu3g00523 1134 SMART LRR_typ_2 114 137 IPR003591 -
Vimu3g00523 1134 SMART LRR_typ_2 90 112 IPR003591 -
Vimu3g00523 1134 SMART LRR_typ_2 689 712 IPR003591 -
Vimu3g00523 1134 SMART LRR_typ_2 641 664 IPR003591 -
Vimu3g00523 1134 SMART LRR_typ_2 713 735 IPR003591 -
Vimu3g00523 1134 SMART LRR_typ_2 569 593 IPR003591 -
Vimu3g00523 1134 SMART LRR_typ_2 138 162 IPR003591 -
Vimu3g00523 1134 SMART LRR_typ_2 281 305 IPR003591 -
Vimu3g00523 1134 SMART LRR_typ_2 425 449 IPR003591 -
Vimu3g00523 1134 SMART LRR_typ_2 377 401 IPR003591 -
Vimu3g00523 1134 SMART LRR_typ_2 665 688 IPR003591 -
Vimu3g00523 1134 SMART LRR_typ_2 329 353 IPR003591 -
Vimu3g00523 1134 SMART LRR_typ_2 186 210 IPR003591 -
Vimu3g00523 1134 SMART LRR_typ_2 594 617 IPR003591 -
Vimu3g00523 1134 SMART LRR_sd22_2 377 403 - -
Vimu3g00523 1134 SMART LRR_sd22_2 425 451 - -
Vimu3g00523 1134 SMART LRR_sd22_2 305 331 - -
Vimu3g00523 1134 SMART LRR_sd22_2 689 715 - -
Vimu3g00523 1134 SMART LRR_sd22_2 114 143 - -
Vimu3g00523 1134 Gene3D Ribonuclease Inhibitor 469 563 IPR032675 -
Vimu3g00523 1134 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 428 1132 - -
Vimu3g00523 1134 ProSiteProfiles Leucine-rich repeat profile. 715 737 IPR001611 GO:0005515
Vimu3g00523 1134 PRINTS Leucine-rich repeat signature 117 130 - -
Vimu3g00523 1134 PRINTS Leucine-rich repeat signature 713 726 - -
Vimu3g00523 1134 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Vimu3g00523 1134 Pfam Leucine rich repeat 691 748 IPR001611 GO:0005515
Vimu3g00523 1134 Pfam Leucine rich repeat 570 630 IPR001611 GO:0005515
Vimu3g00523 1134 ProSitePatterns Tyrosine protein kinases specific active-site signature. 988 1000 IPR008266 GO:0004672|GO:0006468
Vimu3g00523 1134 SUPERFAMILY Protein kinase-like (PK-like) 844 1132 IPR011009 -
Vimu3g00523 1134 Gene3D Phosphorylase Kinase; domain 1 825 942 - -
Vimu3g00523 1134 Gene3D Transferase(Phosphotransferase) domain 1 943 1134 - -
Vimu3g00523 1134 FunFam Uncharacterized protein 495 792 - -
Vimu3g00523 1134 FunFam Leucine-rich repeat receptor protein kinase MSP1 827 942 - -
Vimu3g00523 1134 FunFam Receptor-like protein kinase 7 209 396 - -
Vimu3g00523 1134 SUPERFAMILY RNI-like 442 751 - -
Vimu3g00523 1134 FunFam MDIS1-interacting receptor like kinase 2 943 1134 - -
Vimu3g00523 1134 Gene3D Ribonuclease Inhibitor 364 468 IPR032675 -
Vimu3g00523 1134 FunFam MDIS1-interacting receptor like kinase 2 isoform A 397 494 - -
Vimu3g00523 1134 Pfam Protein kinase domain 865 1131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00523 1134 ProSiteProfiles Protein kinase domain profile. 864 1134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00523 1134 Gene3D Ribonuclease Inhibitor 23 172 IPR032675 -
Vimu3g00523 1134 FunFam Nuclear pore complex protein NUP107 24 181 - -
Vimu3g00523 1134 SUPERFAMILY RNI-like 179 537 - -
Vimu3g00523 1134 SUPERFAMILY L domain-like 53 209 - -
Vimu3g00523 1134 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Vimu3g00523 1134 Gene3D Ribonuclease Inhibitor 173 277 IPR032675 -
Vimu3g00523 1134 Gene3D Ribonuclease Inhibitor 659 784 IPR032675 -
Vimu3g00523 1134 Gene3D Ribonuclease Inhibitor 564 658 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00523 Vimu-Chr3 5132630 5136159 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00523 521 754 Receptor kinase-like Gene Family AT4G08850 36.975 4.93e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu3g00523 Pkinase 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00523 - - gmx:100808316 1463.36